Repositories list

• nomer

  Public
  maps identifiers and names to other identifiers and names

  HTML

  •

  GNU General Public License v3.0

  •4•20•66•0•Updated May 28, 2025May 28, 2025

• globalbioticinteractions

  Public
  Global Biotic Interactions provides access to existing species interaction datasets

  bioinformaticsparasitesbiology+ 11dietecologybiodiversitydiseasesetl-frameworkfood-websecoinformatics+ 4

  Java

  •

  GNU General Public License v3.0

  •16•131•356•1•Updated May 28, 2025May 28, 2025

• globalbioticinteractions.github.io

  Public
  source files for GloBI website

  HTML

  •

  MIT License

  •14•9•7•9•Updated May 28, 2025May 28, 2025

• globi-server-scripts

  Public
  bash scripts used for GloBI server

  Shell

  •0•0•0•0•Updated May 23, 2025May 23, 2025

• globinizer

  Public
  Checks whether datasets are ready for GloBI indexing

  Shell

  •

  MIT License

  •2•1•0•0•Updated May 22, 2025May 22, 2025

• cmnz

  Public
  Configuration to help index species interactions records associated with records of the Canterbury Museum, Christchurch, New Zealand.

  0•0•0•0•Updated May 16, 2025May 16, 2025

• elton

  Public
  Access, review and index existing species interaction datasets

  Java

  •

  GNU General Public License v3.0

  •2•5•17•0•Updated May 16, 2025May 16, 2025

• neofrugivory

  Public
  Configuration to help index: Fuzessy, Lisieux, and Marco Aurélio Pizo. 2025. “ NeoFrugivory: A Comprehensive Database for Frugivory Interactions and Functional Traits in the Neotropics.” Ecology 106(3): e70049. https://doi.org/10.1002/ecy.70049

  0•0•0•0•Updated May 15, 2025May 15, 2025

• ucsb-izc

  Public
  University of California Santa Barbara Invertebrate Zoology Collection

  0•0•1•0•Updated May 9, 2025May 9, 2025

• unite

  Public
  Abarenkov K, et al. 2023. The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered. Nucleic Acids Research, https://doi.org/10.1093/nar/gkad1039. As accessed in 2025-05.

  0•0•0•0•Updated May 7, 2025May 7, 2025

• ncbi-paramyxoviridae

  Public
  configuration to help GloBI index NCBI Paramyxoviridae host associations Hatcher et al. 2017 https://doi.org/10.1093/nar/gkw1065

  0•0•0•0•Updated May 5, 2025May 5, 2025

• ncbi-virus

  Public
  GloBI configuration to index Eneida L. Hatcher, Sergey A. Zhdanov, Yiming Bao, Olga Blinkova, Eric P. Nawrocki, Yuri Ostapchuck, Alejandro A. Schäffer, J. Rodney Brister, Virus Variation Resource – improved response to emergent viral outbreaks, Nucleic Acids Research, Volume 45, Issue D1, January 2017, Pages D482–D490, https://doi.org/10.1093/na…

  0•0•2•0•Updated May 5, 2025May 5, 2025

• ncbi-rhabdoviridae

  Public
  configuration to help GloBI index NCBI Rhabdoviridae host associations Hatcher et al. 2017 https://doi.org/10.1093/nar/gkw1065

  0•0•0•0•Updated May 5, 2025May 5, 2025

• ncbi-orthomyxoviridae

  Public
  0•0•0•0•Updated May 5, 2025May 5, 2025

• ncbi-filoviridae

  Public
  configuration to help GloBI index NCBI Filoviridae host associations Hatcher et al. 2017 https://doi.org/10.1093/nar/gkw1065

  0•0•0•0•Updated May 5, 2025May 5, 2025

• template-dataset

  Public template
  Template species interaction data repository compatible with globalbioticinteractions.org

  biologyspeciesinteractions+ 4ecologybioticglobalbioticinteractionsglobi

  22•8•0•0•Updated May 5, 2025May 5, 2025

• ATLANTIC_POLLINATION

  Public
  GNU General Public License v2.0

  •2•0•0•0•Updated Apr 4, 2025Apr 4, 2025

• camargo-sanabria2025

  Public
  configuration to help index Camargo-Sanabria, A.A., Fernández, J.A., Hernández-Quiroz, N.S., Buitrago-Torres, D.L. and Álvarez-Córdova, F. (2025), Ecological Interactions of Terrestrial Mammals in the Chihuahuan Desert: A Systematic Map. Mam Rev e70001. https://doi.org/10.1111/mam.70001

  0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

• msb-para

  Public
  0•0•8•0•Updated Mar 27, 2025Mar 27, 2025

• pdd

  Public
  configuration to help index Landcare Research (2014-) New Zealand Fungal Herbarium (PDD) specimen data.

  0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

• icmp

  Public
  configuration to index International Collection of Microorganisms from Plants (ICMP)

  0•0•1•0•Updated Mar 25, 2025Mar 25, 2025

• policelli2023

  Public
  configuration to help index Policelli, N., Hoeksema, J.D., Moyano, J., Vilgalys, R., Vivelo, S. and Bhatnagar, J.M. (2023), Global pine tree invasions are linked to invasive root symbionts. New Phytol, 237: 16-21. https://doi.org/10.1111/nph.18527

  0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

• hale2024

  Public
  index configuration for Hale et al. 2024. A highly resolved network reveals the role of terrestrial herbivory in structuring aboveground food webs. Philosophical Transactions of the Royal Society B: Biological Sciences https://doi.org/10.1098/rstb.2023.0180

  0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

• maarjam

  Public
  GloBI index configuration for: Öpik, M., Vanatoa, A., Vanatoa, E., Moora, M., Davison, J., Kalwij, J.M., Reier, Ü., Zobel, M. 2010. The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota). New Phytologist 188: 223-241.

  0•0•0•0•Updated Mar 22, 2025Mar 22, 2025

• fred

  Public
  configuration to help index Iversen CM et al. 2021. Fine-Root Ecology Database (FRED): A Global Collection of Root Trait Data with Coincident Site, Vegetation, Edaphic, and Climatic Data, Version 3. Oak Ridge National Laboratory, Tennessee, U.S.A. Access on-line at: https://doi.org/10.25581/ornlsfa.014/1459186.

  0•0•0•0•Updated Mar 21, 2025Mar 21, 2025

• dorey2023

  Public
  configuration to help index Dorey, J.B., Fischer, E.E., Chesshire, P.R. et al. A globally synthesised and flagged bee occurrence dataset and cleaning workflow. Sci Data 10, 747 (2023). https://doi.org/10.1038/s41597-023-02626-w

  0•0•1•0•Updated Mar 14, 2025Mar 14, 2025

• natural-history-museum-london-interactions-bank

  Public
  NHM Interactions Bank contains interaction data from collections of the Natural History Museum, London. See http://data.nhm.ac.uk/dataset/nhm-ib for more information.

  MIT License

  •0•1•4•0•Updated Mar 7, 2025Mar 7, 2025

• ecoab-host-plant

  Public
  index configuration for Vandame R, Mérida J, Sagot P, Madrigal González D, Bedolla García B Y, González-Vanegas P A, Cultid-Medina C A, Barrios J M (2023). Potential host plant records recovered from ECOAB wild bee collection, Mexico. Version 1.10. Comisión nacional para el conocimiento y uso de la biodiversidad.

  0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• sousa_da_silva_2025

  Public
  configuration to index Sousa da Silva et al. 2025 Diversity patterns and knowledge gaps of Atlantic Forest epiphyllous bryophytes: a highly neglected group https://doi.org/10.1093/aob/mcaf007

  0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

• shaw2020

  Public
  GloBI configuration for indexing Shaw, LP, Wang, AD, Dylus, D, et al. The phylogenetic range of bacterial and viral pathogens of vertebrates. Mol Ecol. 2020; 29: 3361– 3379. https://doi.org/10.1111/mec.15463

  0•0•0•0•Updated Feb 18, 2025Feb 18, 2025