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    34 repositories

    • leiferlab.princeton.edu

      Public
      Lab homepage
      HTML
      •1•2•0•1•Updated Jan 8, 2026Jan 8, 2026

    • explore-sp-atlas

      Public
      Repo for Bryan's rotation, collaborating with Jacob and Genevera
      0•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • celegans-sensory-motor-reflex

      Public
      MATLAB
      •0•0•0•0•Updated Sep 20, 2025Sep 20, 2025

    • kumar-touch-neuron-subtypes

      Public
      MATLAB
      •0•0•0•0•Updated Aug 24, 2025Aug 24, 2025

    • kumar-molecular-mechanism

      Public
      LabVIEW
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • wormdatamodel

      Public
      Data model for whole brain recordings
      Python
      •
      GNU General Public License v3.0
      •4•3•0•1•Updated May 13, 2024May 13, 2024

    • HighMagNeuron

      Public
      Xinwei's pipeline for high mag neuron segmentation
      Python
      •0•0•2•0•Updated Apr 23, 2024Apr 23, 2024

    • CenterlineTracking

      Public
      MATLAB
      •2•2•0•0•Updated Apr 18, 2024Apr 18, 2024

    • spontdyn

      Public
      Data analysis for Gauthey et al. 2024.
      Python
      •0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • pumpprobe

      Public
      Signal propagation atlas libraries, Randi et al. 2022
      Python
      •
      GNU General Public License v3.0
      •2•5•1•0•Updated Sep 20, 2023Sep 20, 2023

    • wormbrain

      Public
      Handling of small brains
      Python
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Aug 16, 2023Aug 16, 2023

    • pump-probe-acquisition

      Public
      Francesco's LabView code for pump-probe experiments. www.github.com/leiferlab/pump-probe-acquisition#francescos-labview-code README at the bottom of the long li…
      LabVIEW
      •1•2•0•0•Updated Aug 14, 2023Aug 14, 2023

    • wormneuronsegmentation-c

      Public
      Optimized code for neuron finding and pseudo-segmentation
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 14, 2023Aug 14, 2023

    • kumar-sensorimotor-integration

      Public
      LabVIEW
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 8, 2023Aug 8, 2023

    • worm-functional-connectivity

      Public
      Python
      •8•6•2•0•Updated Jul 7, 2023Jul 7, 2023

    • kunertPRE2014

      Public
      Reproducing the calculations in Kunert et al., PRE 89 052805 (2014)
      Python
      •0•0•0•0•Updated May 15, 2023May 15, 2023

    • savitzkygolay

      Public
      Savitzky-Golay filters
      Python
      •6•17•3•0•Updated May 12, 2023May 12, 2023

    • analysis-code-kumar-2022

      Public
      LabVIEW
      •0•0•0•0•Updated Dec 8, 2022Dec 8, 2022

    • liu-closed-loop-code

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Sep 14, 2022Sep 14, 2022

    • PredictionCode

      Public
      This repository contains code and visualizations needed to reproduce the results presented in Hallinen et al, "Decoding locomotion from population neural activi…
      MATLAB
      •
      GNU General Public License v2.0
      •6•1•0•0•Updated Feb 12, 2022Feb 12, 2022

    • OSAanalysis

      Public
      analysis for OSA recordings
      MATLAB
      •0•0•0•0•Updated Oct 10, 2020Oct 10, 2020

    • NeRVEclustering

      Public
      Code accompanying Nguyen JP, Linder AN, Plummer GS, Shaevitz JW, Leifer AM (2017) Automatically tracking neurons in a moving and deforming brain. PLoS Comput Bi…
      MATLAB
      •4•7•0•0•Updated Nov 20, 2018Nov 20, 2018

    • liu-temporal-processing

      Public
      Source code associated with Liu et al "Temporal processing and context dependency in C. elegans response to mechanosensation"
      MATLAB
      •
      GNU General Public License v3.0
      •3•4•0•0•Updated May 28, 2018May 28, 2018

    • gmmreg

      Public
      Implementations of the robust point set registration algorithm described in the paper "Robust Point Set Registration Using Gaussian Mixture Models", Bing Jian a…
      C++
      •
      GNU General Public License v3.0
      •94•0•0•0•Updated Apr 19, 2018Apr 19, 2018

    • testPoisson

      Public
      Matlab implementation of E-test for comparing poisson means. Based on Krishnamoorthy, K and Thomson, J. (2004)
      Fortran
      •1•2•1•0•Updated Jan 25, 2018Jan 25, 2018

    • LinderThesisCode

      Public
      MATLAB
      •1•0•0•0•Updated Nov 1, 2017Nov 1, 2017

    • WholeBrainImagingSuite

      Public
      Collection of software components used in Nguyen et al 2015
      0•2•0•0•Updated Mar 24, 2016Mar 24, 2016

    • mindcontrol

      Public
      Closed-loop computer vision software to track and deliver patterned illumination to freely moving C. elegans as part of the CoLBeRT instrument.
      C++
      •
      GNU General Public License v3.0
      •15•6•0•0•Updated Jan 1, 2016Jan 1, 2016

    • matlab-base-utils

      Public
      Library of useful Matlab Utilities
      MATLAB
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Nov 7, 2013Nov 7, 2013

    • TrackFeatureGUI

      Public
      MATLAB GUI for tracking features in images, such as neurons.
      MATLAB
      •0•0•0•0•Updated Oct 29, 2013Oct 29, 2013