Repositories list

• klados

  Public
  A curation tool to edit test cases for the Phyloref curation workflow

  Vue

  •

  MIT License

  •1•2•57•10•Updated Jan 1, 2026Jan 1, 2026

• clade-ontology

  Public
  Ontology of Phylogenetic Clade Definitions

  owlontology

  JavaScript

  •

  MIT License

  •1•1•35•19•Updated Dec 10, 2025Dec 10, 2025

• phyx.js

  Public
  Phyloreference Exchange (Phyx) library in JavaScript

  nodejsphyloreferencing

  JavaScript

  •

  MIT License

  •0•0•23•7•Updated Nov 14, 2025Nov 14, 2025

• open-tree-resolver

  Public archive
  Resolves phyloreferences on the Open Tree of Life

  JavaScript

  •

  MIT License

  •1•0•9•18•Updated Jul 29, 2025Jul 29, 2025

• jphyloref

  Public
  Java

  •

  MIT License

  •0•0•13•5•Updated Jun 18, 2025Jun 18, 2025

• phyloref.github.io

  Public
  Website for the Phyloreferencing project

  SCSS

  •

  MIT License

  •1•1•6•0•Updated Feb 15, 2022Feb 15, 2022

• phylo2owl

  Public
  Tool to convert phylogenies to OWL ontologies

  Python

  •

  MIT License

  •2•4•8•1•Updated Sep 20, 2021Sep 20, 2021

• phyloref-ontology

  Public
  Phyloreferencing Ontology and OWL DL reasoning with phyloreferences

  owlreasoningclade-definitions

  Makefile

  •

  Creative Commons Zero v1.0 Universal

  •1•6•6•0•Updated Apr 7, 2021Apr 7, 2021

• organization

  Public
  Repo primarily used for managing the Phyloref project

  0•0•1•0•Updated Apr 25, 2018Apr 25, 2018

• vocab

  Public
  Project vocabulary and ontology development and online content server

  0•0•1•0•Updated Dec 6, 2017Dec 6, 2017

• specification

  Public
  The Phyloreferencing specification

  MIT License

  •1•0•3•0•Updated Oct 13, 2017Oct 13, 2017