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@statgenetics CSG at CUIMC

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    31 repositories

    • TransCisPredict

      Public
      R
      •0•1•0•0•Updated Feb 25, 2026Feb 25, 2026

    • statgen-courses

      Public
      Tutorials for statistical genetics short courses
      Dockerfile
      •29•39•3•0•Updated Jan 7, 2026Jan 7, 2026

    • allanlab

      Public
      Allan Lab website
      SCSS
      •1.3k•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • finemapr

      Public
      Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR
      R
      •
      GNU General Public License v3.0
      •15•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • fdabl.github.io

      Public
      Personal website
      HTML
      •
      MIT License
      •4•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • deeplearning-biology

      Public
      A list of deep learning implementations in biology
      489•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • awesome-pipeline

      Public
      A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
      650•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • GenGen

      Public
      A set of software tools to facilitate GWAS analysis
      C
      •
      Other
      •11•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • GWASTutorial

      Public
      GWAS Tutorial for Beginners
      Jupyter Notebook
      •97•2•0•0•Updated Feb 20, 2025Feb 20, 2025

    • Mendelian-ARHL

      Public
      This repository contains code used to recreated the figures and tables from the paper named "Mendelian non-syndromic and syndromic hearing loss genes contribut…
      Jupyter Notebook
      •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • imputation

      Public
      Comparing power to detect rare variant aggregate association using exome sequence data vs imputed data
      Jupyter Notebook
      •0•0•0•0•Updated Jul 30, 2024Jul 30, 2024

    • jobs

      Public
      0•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • ARHL-UKB-Rare-Variants

      Public
      Jupyter Notebook
      •2•4•0•0•Updated Jul 14, 2023Jul 14, 2023

    • RVFamSq

      Public
      R
      •2•0•0•1•Updated Sep 9, 2022Sep 9, 2022

    • rvnpl

      Public
      C++
      •
      MIT License
      •2•2•3•0•Updated Aug 18, 2022Aug 18, 2022

    • cstatgen

      Public
      C++ statgen library for SEQPower, SEQLinkage and RV-NPL
      C++
      •1•0•1•0•Updated Mar 16, 2022Mar 16, 2022

    • mendelprob

      Public
      MendelProb: For the design of Mendelian studies
      R
      •1•0•0•1•Updated Jul 15, 2021Jul 15, 2021

    • seqspark

      Public
      SEQSpark documentation
      Scala
      •
      Apache License 2.0
      •6•18•7•0•Updated Nov 17, 2020Nov 17, 2020

    • phenoman

      Public
      Automatically exported from code.google.com/p/phenoman
      Python
      •2•0•0•1•Updated Jul 24, 2020Jul 24, 2020

    • rvnpl-notes

      Public
      https://statgenetics.github.io/rvnpl-notes/
      Jupyter Notebook
      •0•0•0•0•Updated Jul 7, 2020Jul 7, 2020

    • SAIGE

      Public
      R
      •
      GNU Lesser General Public License v3.0
      •74•0•0•0•Updated Jan 15, 2020Jan 15, 2020

    • simped

      Public
      SimPed quickly generates haplotype and/or genotype data for large number of marker loci regardless of pedigree structure.
      0•0•0•0•Updated Aug 7, 2019Aug 7, 2019

    • simrare

      Public
      Automatically exported from code.google.com/p/simrare
      1•0•0•0•Updated Jul 29, 2019Jul 29, 2019

    • rarepedsim

      Public
      Python
      •1•0•1•0•Updated Jul 29, 2019Jul 29, 2019

    • SEQPower

      Public
      Power Analysis and Sample Size Estimation Software for Sequence Based Association Studies
      Python
      •
      GNU General Public License v2.0
      •2•0•0•0•Updated Jun 10, 2019Jun 10, 2019

    • rv-tdt

      Public
      C++
      •3•2•1•0•Updated May 5, 2019May 5, 2019

    • kbac

      Public
      KBAC Statistic Implementation
      C
      •
      MIT License
      •2•0•0•0•Updated Mar 27, 2019Mar 27, 2019

    • rv-gdt

      Public
      Python
      •0•2•4•0•Updated Jul 18, 2018Jul 18, 2018

    • SEQLinkage

      Public
      Collapsed Haplotype Pattern Method for Linkage Analysis of Next-Generation Sequencing Data
      Python
      •
      MIT License
      •6•0•0•0•Updated Mar 27, 2018Mar 27, 2018

    • intermediate_git

      Public
      Plans and slides for a four-hour short course in intermediate Git.
      TeX
      •
      Other
      •3•0•0•0•Updated Jul 2, 2017Jul 2, 2017
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