Skip to content

Fix seqwish dep: point to rust-2 (includes label prop revert)#159

Merged
ekg merged 1 commit intomainfrom
fix-seqwish-dep
Mar 30, 2026
Merged

Fix seqwish dep: point to rust-2 (includes label prop revert)#159
ekg merged 1 commit intomainfrom
fix-seqwish-dep

Conversation

@ekg
Copy link
Copy Markdown
Collaborator

@ekg ekg commented Mar 30, 2026

The seqwish dependency was pointing to transclosure-optimize branch which has a race condition causing crashes on larger inputs (USP14 region). Update to rust-2 which has the fix (PR pangenome/seqwish#137 reverted label propagation to DisjointSetsAsm).

Smoke test: MHC C4 region produces correct output (2727 nodes, 52047bp).

The transclosure-optimize branch had a race condition in label
propagation that crashed on USP14. The rust-2 branch has the fix
(reverted to DisjointSetsAsm) while keeping all other optimizations.
@ekg ekg merged commit f773342 into main Mar 30, 2026
2 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant