Welcome to the Pathway Linked Open Data (Pathway-LOD) organization!
We bring together tools and datasets to make information about plant specialized metabolism interoperable, discoverable, and reusable — across genes, pathways, metabolites, and natural product structures.
🌱 Connect plant metabolic pathway data across resources
🔗 Standardize identifiers and metadata using FAIR and Semantic Web technologies
💡 Enable knowledge graph–driven discovery in plant natural products research
| Project | Description | Link |
|---|---|---|
| 🧬 plantiSMASH | Detects and analyzes biosynthetic gene clusters in plant genomes. | 🔗 Repository |
| 🧩 Pathway-KG | Curating plant pathway information from PlantCyc to Wikipathway format. | 🔗 Repository |
| 📊 Paired Omics FAIR Data | Creating ontologies for paired omics data and public metabolomics data. | 🔗 Repository |
We’re a collaborative initiative led by researchers at:
- Wageningen University & Research (Bioinformatics & Biosystematics)
- ETH Zürich
- Université Côte d’Azur
- University of Fribourg / SIB Swiss Institute of Bioinformatics
- Maastricht University
This project was supported by the 4th edition of the FAIR Data Fund. Read more about the projet at FAIR DATA Fund use case.
Have questions or want to collaborate?
📧 elena.delpup@wur.nl
💼 Elena Del Pup - LinkedIn