Skip to content
View patriciatran's full-sized avatar
37 followers · 14 following

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Organizations

@AquaticDataSciOpenSci

Block or report patriciatran

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
patriciatran/README.md

Hi, I'm Patricia! 👋

I am a Research Computing Professional working as a Bioinformatics and Computational Pipeline Scientist at the University of Wisconsin-Madison.

I obtained my PhD specializing in genomics, bioinformatics, and microbial ecology.

I am passionate about making computing more accessible and approachable for all learners.

🌐 Socials:

LinkedIn GoogleScholar ORCID ResarchGate

Pinned Loading

  1. UW-Madison-Bacteriology-Bioinformatics/binning_wf UW-Madison-Bacteriology-Bioinformatics/binning_wf Public

    Pipeline to bin metagenomes into high-quality metagenomic-assembled genomes using DAGman and HTCondor.

    Shell 3

  2. variant-annotation variant-annotation Public

    Pipeline to annotate genomic variants in long-read data.

    Shell 2

  3. tnseq tnseq Public

    Analysis of Tn-Seq data.

    Shell 1

  4. MolabUW/mrsa-project-eLife2025 MolabUW/mrsa-project-eLife2025 Public

    Code for MRSA Project Mo Lab

    Shell 1 1

  5. UW-Madison-Bacteriology-Bioinformatics/16S_microbiome_wf UW-Madison-Bacteriology-Bioinformatics/16S_microbiome_wf Public

    Forked from madeline-michaelis/16S_chtc_transfer

    Pipeline to analyze 16S rRNA sequencing data using DAGman and HTCondor.

    Shell 2 1

  6. UW-Madison-Bacteriology-Bioinformatics/sr-rnaseq UW-Madison-Bacteriology-Bioinformatics/sr-rnaseq Public

    Example HTCondor Workflow to process short-read RNAseq data on CHTC

    Shell