Improvement_of_ProteinInference

ProteinInference

To Run the Project:

• Open the project in Netbeans IDE
• Build and Run the project

Input:

• Folder sigmaTestData contains input file "test_peptide_44_proteins.txt" for running the test
• File Format, Actual proteins:Test peptides

Output:

• Folder sigmaTestResult contains output file "test_peptide_44_proteins_derived_with_contraint.txt"
• File Format: Iteration no, Epsilon, AvgTP, AvgFP, AvgFN, AvgPrecision, AvgRecall, AvgFmeans

.............................Project Folder(Source code)...............

1. magpi_database_map.txt :

• It is working as Database in our code
• Format of this database is proteinpeptide

2. In Test_peptide Generations folder, test peptide making process is given(readme.txt has been included).

3. In Mapping folder, mapping procedure is given(readme.txt has been included).