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utils
Tobias Overlund Stannius edited this page Jun 7, 2020
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CELLEX includes a handful of functions for mapping DataFrame index from one gene nomenclature format to another. For this purpose, we needed a set of maps, e.g. containing the mapping from a human gene name to the corresponding Ensembl gene ID. The documentation and script used for generating the maps were added in this commit.
CELLEX gene ID and gene ortholog mapping do not have to be specific to one genome build (e.g. GRCh37 or GRCh38), as long as the mapping covers as many genes as possible of the CELLECT gene universe. E.g. mapping ENSG to HGNC is not really dependent on the genome build.