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docs: add Tomcat9 sandbox writable dirs config for Ubuntu package#1580

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Abdeltoto:doc-ubuntu-tomcat9-writable-dirs
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docs: add Tomcat9 sandbox writable dirs config for Ubuntu package#1580
Abdeltoto wants to merge 1 commit intophac-nml:developmentfrom
Abdeltoto:doc-ubuntu-tomcat9-writable-dirs

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@Abdeltoto
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Closes #1555

When Tomcat9 is installed via apt on Ubuntu/Debian, it is sandboxed by systemd and only has write access to a few default directories. IRIDA needs write access to sequence-files, output-files, reference-files, and assembly-files.

This PR adds documentation explaining how to configure \ReadWritePaths\ in a systemd override so IRIDA can write to these directories when using the Ubuntu Tomcat9 package.

Made with Cursor

Closes phac-nml#1555. Document how to configure ReadWritePaths when using
Tomcat9 from apt, so IRIDA can write to sequence-files, output-files,
reference-files, and assembly-files.

Made-with: Cursor
@apetkau
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apetkau commented Mar 27, 2026

Thank you for your contribution, but we are no longer doing development work on this repo.

@apetkau apetkau closed this Mar 27, 2026
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Add documentation on writable directories for tomcat9 in Ubuntu

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