feat: create r script from settings file #835
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…atio calculations
apply relevant copilot suggestions Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Mateusz Kołomański <63905560+m-kolomanski@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
…te derivation to pivot_wider_pknca_results.R (#467)
…rrent including on it the current_settings$general_exclusions
9 tasks
…erse/aNCA into 467-enhancement/r-script
Merge branch '467-enhancement/r-script' of https://github.com/pharmaverse/aNCA into 467-enhancement/r-script # Conflicts: # DESCRIPTION
…atio_calculations.R >> accept incoming) remote-tracking branch 'origin/467-enhancement/r-script' into 826-enhancement-create-r-script-from-settings-file
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Issue
Closes #826
Description
This pull request introduces a new utility function for generating settings code from a template and makes a small bug fix in the ratio calculation logic.
Added a
default_mappinglist and a newget_settings_codefunction inR/get_session_code.Rto automate the generation of settings code from an RDS file, with an example invocation provided for demonstration.Updated
calculate_table_ratios_appinR/ratio_calculations.Rto ensureratio_tableis always treated as a data frame, preventing errors with NULL objects.Definition of Done
How to test
Use the function on a settings file and check that it works
Contributor checklist
Notes to reviewer
Better to review/merge first #789