Skip to content

Minor formatting proposals #5

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

Minor formatting proposals #5

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions data-management.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ The Pinsky Lab is an open science lab that believes in reproducible science. To
1. We generally use a folder called "data" within the repository.
1. We store our raw data with metadata describing what’s in the file and what the columns mean
1. If we clean the data, we often use a folder called something like "data-raw" and a folder called "data-clean" to differentiate data in its original form from data that has been manipulated.
1. If we are using data downloaded from another data source, we often have a folder called "data_dl" for downloaded data, that is not tracked in GitHub. We include the data source in a README file for reproducibility.
1. If our data are too large to store on github, please store them on the lab server in /local/shared/pinskylab/.
1. If we are using data downloaded from another data source, we often have a folder called "data_dl" for downloaded data, that is not tracked in GitHub. We include the data source in a `README` file for reproducibility.
1. If our data are too large to store on github, please store them on the lab server in `/local/shared/pinskylab/`.
1. We back up our data in at least two places (beyond our computers). The cloud can be one site. An external harddrive can be another. Amphiprion is backed up off-site daily.
1. We use scripts to process data, make models, do analyses, etc.
1. We publish git repositories through Zenodo upon publication of a manuscript.
Expand Down