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Pull request for projection.data combination and cell type selection in panel #1

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leprohonmalo wants to merge 11 commits intoprabhakarlab:masterfrom
leprohonmalo:master
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Pull request for projection.data combination and cell type selection in panel #1
leprohonmalo wants to merge 11 commits intoprabhakarlab:masterfrom
leprohonmalo:master

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New function :

  • panelProjection() : function to project sc_data against reference panel (factorized code from old dataProject).
  • multiRCApanel() : function that merge projection.data from several call of dataProject
  • ctQueryReg() : function to select cell type from panel using regular expression, implemented in multiRCApanel, dataProject and panelProjection.
  • ctQueryTFIDF() : same than previous but using tf-idf metric. Not implemented in other function yet as there is a high variability in result depending on query precision and cut-off score (It still works if you find the good enough one).

Change :

  • dataProject() : implemented pre-processing for ColonEpiPanel and some small changes to handle problems that may arise from cell type selection.

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