feat: add Zeiss CZIReader to microscopy/confocal#175
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Sireesiru wants to merge 10 commits intopycroscopy:mainfrom
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feat: add Zeiss CZIReader to microscopy/confocal#175Sireesiru wants to merge 10 commits intopycroscopy:mainfrom
Sireesiru wants to merge 10 commits intopycroscopy:mainfrom
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Can you please add a test for this reader to this PR? Follow examples such as. Also, current tests are failing, because I believe the class is incorrectly defined in the inits. https://github.com/pycroscopy/SciFiReaders/blob/main/tests/readers/microscopy/spm/afm/test_gwy.py With respect to the inits, do not add CZI reader in this way: all = em.all + spm.all + ['CZIReader'] Rather, you should add it as part of the electron microscopy readers. |
Edited Zeiss CZI reader for SciFiReaders library integration, allowing for reading and processing CZI files into sidpy datasets.
This test class verifies the functionality of the CZIReader, including file retrieval, dataset reading, and validation of dataset properties.
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Please check if I did it correct |
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Added a new CZIReader class within a confocal sub-folder to support Zeiss .czi files. The reader handles multi-channel data and extracts relevant metadata from the CZI XML header