@@ -15,7 +15,7 @@ To use the module to read a file in BAM format, create a
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import pysam
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samfile = pysam.AlignmentFile("ex1.bam", "rb")
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- Once a file is opened you can iterate over all of the read mapping to
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+ Once a file is opened you can iterate over all of the reads mapping to
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a specified region using :meth: `~pysam.AlignmentFile.fetch `. Each
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iteration returns a :class: `~pysam.AlignedSegment ` object which
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represents a single read along with its fields and optional tags::
@@ -103,7 +103,7 @@ tabix indexed tab-separated file formats with genomic data::
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:class: `~pysam.TabixFile ` implements lazy parsing in order to iterate
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over large tables efficiently.
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- More detailed usage instructions is at :ref: `usage `.
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+ More detailed usage instructions are available at :ref: `usage `.
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.. note ::
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@@ -200,7 +200,6 @@ FASTQ files
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.. autoclass :: pysam.FastxFile
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:members:
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-
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.. autoclass :: pysam.FastqProxy
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:members:
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@@ -214,10 +213,10 @@ VCF/BCF files
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.. autoclass :: pysam.VariantHeader
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:members:
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- .. autoclass :: pysam.VariantRecord
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+ .. autoclass :: pysam.VariantHeaderRecord
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:members:
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- .. autoclass :: pysam.VariantHeaderRecord
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+ .. autoclass :: pysam.VariantRecord
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:members:
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HTSFile
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