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Pull requests list

Added VariantContig and VariantMetadata documentation.
#1361 opened Sep 18, 2025 by TimD1 Loading…
Add documentation for all VariantRecord related classes
#1359 opened Sep 11, 2025 by TimD1 Loading…
Add VariantRecordSample documentation
#1358 opened Sep 10, 2025 by TimD1 Loading…
2
7
feat: add class to generate pileup over AlignedSegments
#1353 opened Jul 4, 2025 by nh13 • Draft
1
2
Add bespoke classes for accessing SEQ and QUAL
#1347 opened Jun 10, 2025 by jmarshall • Draft
Avoid string escaping for str(SamtoolsError)
#1345 opened Jun 4, 2025 by Fan-iX Loading…
1
Update imports to htslib/samtools/bcftools 1.22
#1343 opened Jun 2, 2025 by jmarshall Loading…
Add support for filtering rows by flags
#1337 opened Apr 27, 2025 by althonos Loading…
Speed up bcf genotype count
#1281 opened Apr 22, 2024 by astaric Loading…
MinGW version of pysam
#1274 opened Mar 28, 2024 by teepean Loading…
35
Automatically translate VariantRecord on write
#1270 opened Feb 26, 2024 by kkchau Loading…
1
Add FastxRecord to the docs
#1245 opened Nov 25, 2023 by nh13 Loading…
1
Update handling of INFO/END when writing records in VCF
#1201 opened Jun 29, 2023 by rickymagner Loading…
2
Added support for persisting IndexedReads index to disk
#1037 opened Aug 26, 2021 by Prakash2403 Loading…
[WIP] build pysam on Windows
#964 opened Nov 3, 2020 by fo40225 Loading…
4
Add with_ref and with_query args for get_aligned_pairs.
#777 opened Mar 23, 2019 by y9c Loading…
2
Implement VariantRecord#calc_number
#672 opened Apr 22, 2018 by multimeric Loading…
2
ProTip! Exclude everything labeled bug with -label:bug.