Kidney and visualization changes#114

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sarakurkowska wants to merge 515 commits intomainfrom

kidney_and_visualization_changes

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Commits on Sep 11, 2024

Commits on Sep 12, 2024

update for bed for monoexp eq
sarakurkowska
committed

Commits on Sep 15, 2024

Update Base dosimetry to handle new fit approach
Pedro L. Esquinas
committed
Add lmfit to requirement
Pedro L. Esquinas
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Update init
Pedro L. Esquinas
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Add info message voxel S
Pedro L. Esquinas
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Fix Voxel S
Pedro L. Esquinas
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Commits on Sep 16, 2024

Add helper tools to extract information from JSON.
Pedro L. Esquinas
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Fix index.
Pedro L. Esquinas
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Delete file.
Pedro L. Esquinas
committed

Commits on Nov 27, 2024

Commits on Nov 28, 2024

Commits on Dec 13, 2024

Commits on Jan 7, 2025

add timepoints of blood collection
sarakurkowska
committed

Commits on Jan 22, 2025

Merge pull request #54 from qurit/sara_preclinical_dosimetry
plesqui
authored

Commits on Jan 24, 2025

Minor
Pedro L. Esquinas
committed
Merge remote-tracking branch 'origin/dev' into plef-refactor-fitting
Pedro L. Esquinas
committed

Commits on Jan 25, 2025

Fix warning dataframe lesions.
Pedro L. Esquinas
committed

Commits on Feb 5, 2025

Merge pull request #53 from qurit/plef-refactor-fitting
carluri
authored

Commits on Mar 17, 2025

Update comment BM Scaling.
Pedro L. Esquinas
committed

Commits on Mar 18, 2025

Add smart fitting
Pedro L. Esquinas
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Smart fit based on Akaike.
Pedro L. Esquinas
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Fix bug model selection
Pedro L. Esquinas
committed

Commits on Apr 27, 2025

Handle User-defined Calibration factor
Pedro L. Esquinas
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Add default activity
Pedro L. Esquinas
committed

Commits on May 13, 2025

update changes to more methods - old version
sarakurkowska
committed

Commits on May 15, 2025

Commits on May 19, 2025

Commits on May 21, 2025

Commits on May 23, 2025

fix: pytest tests now pass.
jasonspence
committed

Commits on May 27, 2025

optimize tumor sink effect correction
sarakurkowska
committed

Commits on May 28, 2025

Commits on May 29, 2025

Commits on May 31, 2025

ICRP_mass_male
sarakurkowska
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Commits on Jun 3, 2025

Refactor masks resampling
Pedro L. Esquinas
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Modify LongStudy to accomodate sitk masks.
Pedro L. Esquinas
committed
Merge branch 'dev' into plef-qspect
Pedro L. Esquinas
committed
Merge pull request #65 from qurit/first-pr-jason
plesqui
authored
Merge branch 'dev' into plef-qspect
Pedro L. Esquinas
committed

Commits on Jun 4, 2025

Update authors
carluri
authored

Commits on Jun 9, 2025

Commits on Jul 7, 2025

register CT to SPECT function
Pedro L. Esquinas
committed
Clean redundant names
Pedro L. Esquinas
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Force orthogonality of loaded images, and other misc
Pedro L. Esquinas
committed

Commits on Jul 8, 2025

Merge pull request #66 from qurit/make_tests_run
plesqui
authored
Remove debug message.
Pedro L. Esquinas
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Support to save fit figures as pdf.
Pedro L. Esquinas
committed

Commits on Jul 9, 2025

generalize folder names
sarakurkowska
committed
delete specific value for uncertainty
sarakurkowska
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delete the file from doodle folder
sarakurkowska
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Merge pull request #67 from qurit/preclinical_dosimetry
plesqui
authored
Merge branch 'dev' into plef-qspect
plesqui
authored
Fix type.
Pedro L. Esquinas
committed
Fix bug in squeeze image dimension.
Pedro L. Esquinas
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Typo.
Pedro L. Esquinas
committed

Commits on Jul 10, 2025

Support for SPECT data stored as "PT" modality.
Pedro L. Esquinas
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Fix bug with type consistency for tia_map
Pedro L. Esquinas
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Allow use of default kernel if there is none present for specific voxel size
Pedro L. Esquinas
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Commits on Jul 11, 2025

Initialize dataframes
Pedro L. Esquinas
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Add base output json structure.
Pedro L. Esquinas
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Create Absorbed Dose DataFrame
Pedro L. Esquinas
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Commits on Aug 1, 2025

Fix of missmatch of shapes
Pedro L. Esquinas
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Add check for mask and target image before resampling.
Pedro L. Esquinas
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Fix NotImplementedError
Pedro L. Esquinas
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Fix bug in qspect scaling.
Pedro L. Esquinas
committed

Commits on Aug 5, 2025

Fix bug for handling PT modality
Pedro L. Esquinas
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Merge pull request #68 from qurit/plef-qspect
sarakurkowska
authored

Commits on Aug 11, 2025

add dosimetry calculation by applying predefined s-values and perform mass scaling
sarakurkowska
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Commits on Aug 12, 2025

Commits on Aug 15, 2025

Commits on Aug 16, 2025

Commits on Aug 20, 2025

Commits on Aug 21, 2025

refactor: evaluate Lesion names programmatically
jasonspence
committed

Commits on Aug 22, 2025

Commits on Sep 11, 2025

adjust for cases when r2 and AIC are not calculated (cycles 2-6)
sarakurkowska
committed

Commits on Oct 30, 2025

Commits on Oct 31, 2025

Commits on Nov 9, 2025

Commits on Nov 12, 2025

Merge pull request #92 from qurit/improvements
sarakurkowska
authored

Commits on Nov 13, 2025

improve mass scaling for total body
sarakurkowska
committed

Commits on Nov 14, 2025

Merge branch 'dev' into sk_new_branch_for_merging_changes
sarakurkowska
committed

Commits on Nov 19, 2025

Commits on Jan 4, 2026

Commits on Jan 8, 2026

adjust for cases with one kidney only
sarakurkowska
committed