This repository contains scripts supporting the manuscript:
Discovery of barley gene candidates for low temperature and drought tolerance via environmental association. Li Lei, Ana M Poets, Chaochih Liu, Skylar R. Wyant, Paul J. Hoffman, Corey K Carter, Richard M. Trantow, Brian G. Shaw, Xin Li, Gary Muehlbauer, Fumiaki Katagiri, Peter L Morrell https://doi.org/10.1534/g3.119.400401
All analysis scripts are in the directory called script. Subdirectories in script are organized by type of analysis (i.e. recombination, GWAS, LD, etc.).