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Rat Genome Database

6 followers
rgd.web@mcw.edu

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rgd-core-library rgd-core-library Public

Domain layer and shared components

Java
rgd-web-application rgd-web-application Public

Code used by the RGD web site and tools

JavaScript 2
rgd-web-services rgd-web-services Public

Swagger implementation

Java
rgd-annotation-files rgd-annotation-files Public

GO annotation files in GAF, GPAD and GPI format

Repositories

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Showing 10 of 153 repositories

statistics-archiver-pipeline Public
Generate comprehensive statistics for objects in RGD database and store it; run weekly.

rat-genome-database/statistics-archiver-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jan 26, 2026
rgd-web-application Public
Code used by the RGD web site and tools

rat-genome-database/rgd-web-application’s past year of commit activity

JavaScript 2 GPL-3.0 0 0 2 Updated Jan 26, 2026
rgd-annotation-files Public
GO annotation files in GAF, GPAD and GPI format

rat-genome-database/rgd-annotation-files’s past year of commit activity

0 GPL-3.0 0 1 0 Updated Jan 24, 2026
phenotype-annotation-pipeline Public
Phenotype annotation pipeline, for mouse and human genes.

rat-genome-database/phenotype-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jan 24, 2026
rgd-core-library Public
Domain layer and shared components

rat-genome-database/rgd-core-library’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jan 23, 2026
expression-data-json-generator Public
Generates JSON file for each study with the expression values for the report page

rat-genome-database/expression-data-json-generator’s past year of commit activity

0 GPL-3.0 0 0 0 Updated Jan 23, 2026
gff3-pipeline Public
Creates gff3 files to be loaded into RGD JBrowse instance.

rat-genome-database/gff3-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jan 22, 2026
expression-tpm-pipeline Public
load the TPM data being generated for GEO expression samples

rat-genome-database/expression-tpm-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jan 21, 2026
RDO-Disease-Ontology Public

rat-genome-database/RDO-Disease-Ontology’s past year of commit activity

0 0 1 0 Updated Jan 20, 2026
RS-Rat-Strain-Ontology Public
Rat strain ontology maintained by RGD

rat-genome-database/RS-Rat-Strain-Ontology’s past year of commit activity

0 2 0 1 Updated Jan 20, 2026

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