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1. BU-BMSIP/beffert_ho_lab_pacbio_ad_pilot BU-BMSIP/beffert_ho_lab_pacbio_ad_pilot Public

   A reproducible and modular pipeline for processing PacBio IsoSeq long-read RNA sequencing data using Nextflow. Supports transcript quantification, splicing analysis, and differential expression ana…

   HTML

2. placenta_multimodal_transcriptomics placenta_multimodal_transcriptomics Public

   A extensive workflow for scRNA-seq analysis with spatial transcriptomics integration in human placenta.

3. chipseq_nextflow chipseq_nextflow Public

   A comprehensive ChIP-seq peak calling and downstream analysis workflow implemented in Nextflow, with differential expression analysis integration.

   Nextflow

4. glioblastoma_scRNAseq_rshiny_app glioblastoma_scRNAseq_rshiny_app Public

   This Shiny app provides an interactive interface to analyze gene expression data through various modules, including data summary, counts matrix processing, differential expression analysis, and tra…

   R

5. prostate_cancer_supervised_classifier prostate_cancer_supervised_classifier Public

   A supervised learning script using scikit-learn that classifies prostate cancer gene expression data into early and late stage cancer.

   Jupyter Notebook

6. gwas_rheumatoid_arthritis gwas_rheumatoid_arthritis Public

   A genome-wide association study of rheumatoid arthritis with sex-stratified analysis and polygenic risk scoring

   R