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When doctor runs on protected main, sandbox auto-finish can return success while leaving the PR open due branch policy. The CLI previously labeled this as "Auto-finish flow completed", which is misleading and caused confusion. This change inspects agent-branch-finish output for pending markers, reports a pending status with PR URL, and adds a regression test for blocked merge policy behavior. Constraint: Keep doctor exit behavior non-fatal when PR is created but merge is pending policy gates Rejected: Force --wait-for-merge for all doctor runs | risks long hangs and timeouts on review-gated repositories Confidence: high Scope-risk: narrow Reversibility: clean Directive: Treat agent-branch-finish pending markers as non-complete states in higher-level status messaging Tested: node --check bin/multiagent-safety.js Tested: node --test test/install.test.js Tested: npm test
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Automated by scripts/agent-branch-finish.sh (PR flow).