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.ipynb_checkpoints
.ipynb_checkpoints
 
 
Amino acid metabolism
Amino acid metabolism
 
 
Biosynthesis of other secondary metabolites
Biosynthesis of other secondary metabolites
 
 
Carbohydrate metabolism
Carbohydrate metabolism
 
 
Energy metabolism
Energy metabolism
 
 
Lipid metabolism
Lipid metabolism
 
 
Metabolism of cofactors and vitamins
Metabolism of cofactors and vitamins
 
 
Metabolism of other amino acids
Metabolism of other amino acids
 
 
Metabolism of terpenoids and polyketides
Metabolism of terpenoids and polyketides
 
 
Nucleotide metabolism
Nucleotide metabolism
 
 
Xenobiotics biodegradation and metabolism
Xenobiotics biodegradation and metabolism
 
 
__pycache__
__pycache__
 
 
clustermapsT
clustermapsT
 
 
extracellular_plots
extracellular_plots
 
 
filter_plots
filter_plots
 
 
pathways_withCompounds
pathways_withCompounds
 
 
Chemical structure transformation maps.png
Chemical structure transformation maps.png
 
 
ChisholmPro_TOCandDOCdata.2017.04.28.csv
ChisholmPro_TOCandDOCdata.2017.04.28.csv
 
 
ChisholmPro_cellSpecific_KEGGexport.2017.07.31_v1.csv
ChisholmPro_cellSpecific_KEGGexport.2017.07.31_v1.csv
 
 
Chisholm_Pro_newAcids.2017.04.27.jpg
Chisholm_Pro_newAcids.2017.04.27.jpg
 
 
KEGGexpected_2019.05.10.csv
KEGGexpected_2019.05.10.csv
 
 
ProKEGG.ipynb
ProKEGG.ipynb
 
 
ProKEGG_countCpdsByGroup.ipynb
ProKEGG_countCpdsByGroup.ipynb
 
 
Pro_TSQmeasured_cpds.png
Pro_TSQmeasured_cpds.png
 
 
Pro_cpds.png
Pro_cpds.png
 
 
Pro_pathways.png
Pro_pathways.png
 
 
Pro_plotReplicates.ipynb
Pro_plotReplicates.ipynb
 
 
Pro_topTen.png
Pro_topTen.png
 
 
README.md
README.md
 
 
allMeasured.csv
allMeasured.csv
 
 
br08901.keg
br08901.keg
 
 
colorbar_only.py
colorbar_only.py
 
 
compoundList_Amino acid metabolism.csv
compoundList_Amino acid metabolism.csv
 
 
compoundList_Biosynthesis of other secondary metabolites.csv
compoundList_Biosynthesis of other secondary metabolites.csv
 
 
compoundList_Carbohydrate metabolism.csv
compoundList_Carbohydrate metabolism.csv
 
 
compoundList_Chemical structure transformation maps.csv
compoundList_Chemical structure transformation maps.csv
 
 
compoundList_Energy metabolism.csv
compoundList_Energy metabolism.csv
 
 
compoundList_Glycan biosynthesis and metabolism.csv
compoundList_Glycan biosynthesis and metabolism.csv
 
 
compoundList_Lipid metabolism.csv
compoundList_Lipid metabolism.csv
 
 
compoundList_Metabolism of cofactors and vitamins.csv
compoundList_Metabolism of cofactors and vitamins.csv
 
 
compoundList_Metabolism of other amino acids.csv
compoundList_Metabolism of other amino acids.csv
 
 
compoundList_Metabolism of terpenoids and polyketides.csv
compoundList_Metabolism of terpenoids and polyketides.csv
 
 
compoundList_Nucleotide metabolism.csv
compoundList_Nucleotide metabolism.csv
 
 
compoundList_Xenobiotics biodegradation and metabolism.csv
compoundList_Xenobiotics biodegradation and metabolism.csv
 
 
compoundNames.csv
compoundNames.csv
 
 
compoundsSBin3_extracellular.jpg
compoundsSBin3_extracellular.jpg
 
 
compoundsSBin3_filters.jpg
compoundsSBin3_filters.jpg
 
 
dendrogram_vertical.jpg
dendrogram_vertical.jpg
 
 
dendrogram_vertical_extracellular.jpg
dendrogram_vertical_extracellular.jpg
 
 
figure_extracellular_3m2ob.jpg
figure_extracellular_3m2ob.jpg
 
 
figure_extracellular_3m2op.jpg
figure_extracellular_3m2op.jpg
 
 
figure_extracellular_4m2op.jpg
figure_extracellular_4m2op.jpg
 
 
figure_filter_3m2ob.jpg
figure_filter_3m2ob.jpg
 
 
figure_filter_3m2op.jpg
figure_filter_3m2op.jpg
 
 
figure_filter_4m2op.jpg
figure_filter_4m2op.jpg
 
 
find_metabolites_by_strain.ipynb
find_metabolites_by_strain.ipynb
 
 
fxn_plotPathway.py
fxn_plotPathway.py
 
 
fxn_plotPathway_v2.py
fxn_plotPathway_v2.py
 
 
globalsave.pkl
globalsave.pkl
 
 
glutamicAcid.jpg
glutamicAcid.jpg
 
 
justAminoAcids_corrected.pdf
justAminoAcids_corrected.pdf
 
 
justAminoAcids_extracellular.pdf
justAminoAcids_extracellular.pdf
 
 
justAminoAcids_filters.pdf
justAminoAcids_filters.pdf
 
 
measured_v_expected_v1.ipynb
measured_v_expected_v1.ipynb
 
 
nCompounds_extracellular.jpg
nCompounds_extracellular.jpg
 
 
nCompounds_filters.jpg
nCompounds_filters.jpg
 
 
next.csv
next.csv
 
 
not0801.csv
not0801.csv
 
 
optimumLight_AminoAcids_filters.pdf
optimumLight_AminoAcids_filters.pdf
 
 
plotByGroup.py
plotByGroup.py
 
 
replete_filter_stackedBarPlot.jpg
replete_filter_stackedBarPlot.jpg
 
 
shelve.out.bak
shelve.out.bak
 
 
shelve.out.dat
shelve.out.dat
 
 
shelve.out.dir
shelve.out.dir
 
 
stackedBarPlot.jpg
stackedBarPlot.jpg
 
 
stackedBarPlot_vertical.jpg
stackedBarPlot_vertical.jpg
 
 
stackedBarPlot_vertical_extracellular.jpg
stackedBarPlot_vertical_extracellular.jpg
 
 
stackedBarPlot_vertical_replete_filter.jpg
stackedBarPlot_vertical_replete_filter.jpg
 
 
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Pro_mtabs (Kujawinski Lab, WHOI)

11 October 2023
Update to transfer to organization KujawinskiLaboratory. All prior edits as user KujawinskiLaboratory were Krista Longnecker, whose GitHub name is now @redbluewater

17 April 2017 targeted metabolomics data for multiple strains of Prochlorococccus integrating pathway maps from KEGG with the compound information.
KLongnecker 4/17/2017

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targeted metabolomics data for multiple strains of Prochlorococccus

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