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Merged
nickreich merged 7 commits into from
Dec 9, 2025
Merged

Add directional wave features and release v1.1.0 #15

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20597ce
Add directional wave features for spatial-temporal disease modeling
nickreich Nov 14, 2025
b870a07
adding directional wave features documentation
nickreich Nov 17, 2025
feaf759
Bump version to 0.2.0 and remove examples dependencies
nickreich Nov 17, 2025
2a24d63
Fix ruff linting errors
nickreich Nov 17, 2025
c491556
updating changelog and version to align with interim package updates.…
nickreich Dec 8, 2025
bf10aa5
Merge branch 'main' into ngr/add-spatial-covariates
nickreich Dec 8, 2025
4ba0d10
Add changelog entry for v1.0.0 release
nickreich Dec 8, 2025
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1 change: 0 additions & 1 deletion .pre-commit-config.yaml
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Expand Up @@ -22,7 +22,6 @@ repos:
rev: 'v1.10.1' # Use the sha / tag you want to point at
hooks:
- id: mypy
additional_dependencies: [types-all]
- repo: https://github.com/codespell-project/codespell
rev: v2.3.0
hooks:
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32 changes: 31 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -7,6 +7,34 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

## [Unreleased]

## [1.1.0] - 2025-12-08

### Added
- Directional wave features for spatial-temporal disease modeling in GBQR
- Spatial utilities module (`spatial_utils.py`) with location centroids for US states
- State centroids data file (`state_centroids.csv`) with geographic coordinates for all 50 US states, DC, and territories
- Data directory README documenting available data files
- Haversine distance and bearing calculations for spatial analysis
- `create_directional_wave_features()` function in preprocessing pipeline
- Configuration options for directional wave features (disabled by default for backwards compatibility)
- Comprehensive test suite: 20 unit tests for spatial utilities, 14 for feature generation, 7 integration tests
- Documentation for directional wave features implementation

### Removed
- Optional "examples" dependencies (jupyter, matplotlib, plotly)

## [1.0.0] - 2025-11-24

### Added
- NSSP data source support for SARIX and GBQR models
- HSA (Hospital Service Area) level forecasting support
- State-level forecasting for NSSP data

### Changed
- **Breaking**: `run_config.locations` superseded by `run_config.states` and `run_config.hsas`
- NSSP predictions restricted to [0, 1] range for proportion data
- Updated test infrastructure with config creation helpers

## [0.1.0] - 2025-11-03

### Added
Expand Down Expand Up @@ -43,6 +71,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Changed
- Updated to latest iddata API

[Unreleased]: https://github.com/reichlab/idmodels/compare/v0.1.0...HEAD
[Unreleased]: https://github.com/reichlab/idmodels/compare/v1.1.0...HEAD
[1.1.0]: https://github.com/reichlab/idmodels/compare/v1.0.0...v1.1.0
[1.0.0]: https://github.com/reichlab/idmodels/compare/v0.1.0...v1.0.0
[0.1.0]: https://github.com/reichlab/idmodels/compare/v0.0.1...v0.1.0
[0.0.1]: https://github.com/reichlab/idmodels/releases/tag/v0.0.1
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