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transformed mesh splits into numpy arrays #5

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transformed mesh splits into numpy arrays #5

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3 changes: 3 additions & 0 deletions neurd/soma_extraction_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -70,6 +70,7 @@ def side_length_check(current_mesh,side_length_ratio_threshold=3):

def largest_mesh_piece(msh):
mesh_splits_inner = msh.split(only_watertight=False)
mesh_splits_inner = np.array(mesh_splits_inner)
total_mesh_split_lengths_inner = [len(k.faces) for k in mesh_splits_inner]
ordered_mesh_splits_inner = mesh_splits_inner[np.flip(np.argsort(total_mesh_split_lengths_inner))]
return ordered_mesh_splits_inner[0]
Expand Down Expand Up @@ -995,6 +996,7 @@ def extract_soma_center(
#preforming the splits of the decimated mesh

mesh_splits = new_mesh.split(only_watertight=False)
mesh_splits = np.array(mesh_splits)

#get the largest mesh
mesh_lengths = np.array([len(split.faces) for split in mesh_splits])
Expand Down Expand Up @@ -1120,6 +1122,7 @@ def extract_soma_center(

#splitting the Poisson into the largest pieces and ordering them
mesh_splits_inner = new_mesh_inner.split(only_watertight=False)
mesh_splits_inner = np.array(mesh_splits_inner)
total_mesh_split_lengths_inner = [len(k.faces) for k in mesh_splits_inner]
ordered_mesh_splits_inner = mesh_splits_inner[np.flip(np.argsort(total_mesh_split_lengths_inner))]

Expand Down