NeDRex-Web / RepoScape-Web

Is an interactive and responsive web interface for the heterogenous, molecularbiological network database NeDRexDB. A live instance can be found at web.nedrex.net.

Building Docker Images

Use the web/docker-compose.sh to regenerate images. Execute the bash script in the web directory with following parameter:

• Local production test images: ./docker-compose.sh prod
• Current server configuration images:
• ./docker-compose.sh uhh

Deployement with Docker

Use the docker-compose file to deploy NeDRex-Web on your machine: Adjust image names based on the purpose:

• Local execution: andimajore/nedrex_repo:server and andimajore/nedrex_repo:web
• Execution on exbio servers: andimajore/nedrex_repo:server_exbio and andimajore/nedrex_repo:web_exbio

wget https://raw.githubusercontent.com/AndiMajore/RepoScapeWeb/master/docker-compose.yml -O docker-compose.yml
docker-compose pull
docker-compose up

NeDRex-Web interface is running on localhost:8080/nedrex/

Manual Deployement

First clone the project:

git clone https://github.com/AndiMajore/RepoScapeWeb.git

or

git clone https://github.com/AndiMajore/RepoScapeWeb.git
git@github.com:AndiMajore/RepoScapeWeb.git

Database

Use the docker container andimajore/nedrex_repo:db execute it with the parameters from the db-service in the docker-compose file and map the exposed port to default mysql port (33060:3306): or Set up a MySQL database and use the database setup batch file:

mysql < (curl https://raw.githubusercontent.com/AndiMajore/RepoScapeWeb/master/web/resources/scripts/db_setup.sh)

For Development

Backend

Use IDE to run Main-Class/Spring-Boot-Application.

Frontend

cd web/frontend
npm run serve

Production

Tomcat settings

If the services are planned to be deployed using a tomcat server, the configuration files used for the dockerized tomcat versions can be found in frontend/docker/ and backend/docker/.

Backend

Use maven to compile project and start application, make sure you use >=java14.

cd web/backend
mvn package
java -Xmx4g -jar target/nerdrexweb-backend.war

or deploy with a tomcat server.

Frontend

Generate webcontent to dist/ directory:

cd web/frontend
npm run build

Host paths can be set by according editing the src/Config.js file before building. The content of dist/ can be served by nginx or tomcat server.