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Add FEP-docking-prep-style pose-constrained conformer generation. New entry point
generate_conformers_from_pose(mol, constrained_atoms)seeds from an MCS-aligned conformer instead of ETKDG, filters the rotor model to only free terminal bonds, and pins core atoms via MMFF position restraints + exact coordinate reset after each minimization (zero drift). Global shake suppressed in this mode. NewConstraintSpecdataclass is the general hook for future constraint types.Also adds "analogue" preset, 16 new tests, and docs in README/SCIENCE.md.