Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
36 changes: 36 additions & 0 deletions database/github/Baohua-Chen/GFFx/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,36 @@
{
"parser": "github",
"uid": "github/Baohua-Chen/GFFx",
"url": "https://github.com/Baohua-Chen/GFFx",
"data": {
"doi": "10.1101/2025.08.08.669426",
"name": "GFFx",
"url": "https://github.com/Baohua-Chen/GFFx",
"full_name": "Baohua-Chen/GFFx",
"html_url": "https://github.com/Baohua-Chen/GFFx",
"description": "A Rust-Based suite of utilities for ultra-fast genomic feature extraction",
"created_at": "2025-07-09T09:33:33Z",
"updated_at": "2025-09-18T13:56:47Z",
"clone_url": "https://github.com/Baohua-Chen/GFFx.git",
"size": 47672,
"stargazers_count": 20,
"watchers_count": 20,
"language": "Rust",
"license": {
"key": "apache-2.0",
"name": "Apache License 2.0",
"spdx_id": "Apache-2.0",
"url": "https://api.github.com/licenses/apache-2.0",
"node_id": "MDc6TGljZW5zZTI="
},
"subscribers_count": 1,
"owner": {
"html_url": "https://github.com/Baohua-Chen",
"avatar_url": "https://avatars.githubusercontent.com/u/52615906?v=4",
"login": "Baohua-Chen",
"type": "User"
},
"timestamp": "2025-09-21 00:53:02.465019",
"avatar": "https://avatars.githubusercontent.com/u/52615906?v=4"
}
}
42 changes: 42 additions & 0 deletions database/github/BlueSpacePotato/hsi-wizard/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,42 @@
{
"parser": "github",
"uid": "github/BlueSpacePotato/hsi-wizard",
"url": "https://github.com/BlueSpacePotato/hsi-wizard",
"data": {
"doi": "https://doi.org/10.5281/zenodo.16959456",
"name": "hsi-wizard",
"url": "https://github.com/BlueSpacePotato/hsi-wizard",
"full_name": "BlueSpacePotato/hsi-wizard",
"html_url": "https://github.com/BlueSpacePotato/hsi-wizard",
"description": "Straightforward environment for hyperspectral analysis in Python.",
"created_at": "2023-07-14T10:56:29Z",
"updated_at": "2025-07-25T10:16:30Z",
"clone_url": "https://github.com/BlueSpacePotato/hsi-wizard.git",
"size": 15685,
"language": "Python",
"open_issues_count": 3,
"license": {
"key": "mit",
"name": "MIT License",
"spdx_id": "MIT",
"url": "https://api.github.com/licenses/mit",
"node_id": "MDc6TGljZW5zZTEz"
},
"subscribers_count": 1,
"owner": {
"html_url": "https://github.com/BlueSpacePotato",
"avatar_url": "https://avatars.githubusercontent.com/u/35776511?v=4",
"login": "BlueSpacePotato",
"type": "User"
},
"topics": [
"hsi",
"hyperspectral",
"hyperspectral-imaging",
"python",
"python3"
],
"timestamp": "2025-09-21 00:52:44.014697",
"avatar": "https://avatars.githubusercontent.com/u/35776511?v=4"
}
}
38 changes: 38 additions & 0 deletions database/github/ConnorStoneAstro/caskade/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,38 @@
{
"parser": "github",
"uid": "github/ConnorStoneAstro/caskade",
"url": "https://github.com/ConnorStoneAstro/caskade",
"data": {
"doi": "https://doi.org/10.5281/zenodo.17100450",
"name": "caskade",
"url": "https://github.com/ConnorStoneAstro/caskade",
"full_name": "ConnorStoneAstro/caskade",
"html_url": "https://github.com/ConnorStoneAstro/caskade",
"description": "Build scientific simulators, treating them as a directed acyclic graph",
"created_at": "2024-10-11T19:10:22Z",
"updated_at": "2025-09-15T18:57:47Z",
"clone_url": "https://github.com/ConnorStoneAstro/caskade.git",
"homepage": "https://caskade.readthedocs.io",
"size": 1004,
"stargazers_count": 6,
"watchers_count": 6,
"language": "Python",
"open_issues_count": 12,
"license": {
"key": "mit",
"name": "MIT License",
"spdx_id": "MIT",
"url": "https://api.github.com/licenses/mit",
"node_id": "MDc6TGljZW5zZTEz"
},
"subscribers_count": 1,
"owner": {
"html_url": "https://github.com/ConnorStoneAstro",
"avatar_url": "https://avatars.githubusercontent.com/u/78555321?v=4",
"login": "ConnorStoneAstro",
"type": "User"
},
"timestamp": "2025-09-21 00:52:42.568339",
"avatar": "https://avatars.githubusercontent.com/u/78555321?v=4"
}
}
42 changes: 42 additions & 0 deletions database/github/DPP4ResearchGroup/substrateminer/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,42 @@
{
"parser": "github",
"uid": "github/DPP4ResearchGroup/substrateminer",
"url": "https://github.com/DPP4ResearchGroup/substrateminer",
"data": {
"doi": "https://doi.org/10.5281/zenodo.17015279",
"name": "substrateminer",
"url": "https://github.com/DPP4ResearchGroup/substrateminer",
"full_name": "DPP4ResearchGroup/substrateminer",
"html_url": "https://github.com/DPP4ResearchGroup/substrateminer",
"description": "A python package to discover enzyme substrates based on sequence consensus ",
"created_at": "2024-08-17T07:12:42Z",
"updated_at": "2025-09-13T05:56:10Z",
"clone_url": "https://github.com/DPP4ResearchGroup/substrateminer.git",
"homepage": "https://bit.ly/substrateminer-manual",
"size": 5443,
"stargazers_count": 1,
"watchers_count": 1,
"language": "Python",
"open_issues_count": 6,
"license": {
"key": "mit",
"name": "MIT License",
"spdx_id": "MIT",
"url": "https://api.github.com/licenses/mit",
"node_id": "MDc6TGljZW5zZTEz"
},
"owner": {
"html_url": "https://github.com/DPP4ResearchGroup",
"avatar_url": "https://avatars.githubusercontent.com/u/39476165?v=4",
"login": "DPP4ResearchGroup",
"type": "Organization"
},
"topics": [
"bioinformatics",
"proteomics",
"substrate"
],
"timestamp": "2025-09-21 00:52:43.646263",
"avatar": "https://avatars.githubusercontent.com/u/39476165?v=4"
}
}
46 changes: 46 additions & 0 deletions database/github/DatViseR/Vivid-Volcano/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,46 @@
{
"parser": "github",
"uid": "github/DatViseR/Vivid-Volcano",
"url": "https://github.com/DatViseR/Vivid-Volcano",
"data": {
"doi": "https://doi.org/10.5281/zenodo.16920103",
"name": "Vivid-Volcano",
"url": "https://github.com/DatViseR/Vivid-Volcano",
"full_name": "DatViseR/Vivid-Volcano",
"html_url": "https://github.com/DatViseR/Vivid-Volcano",
"description": "A shiny app for custom analyzes of preprocessed omics data",
"created_at": "2024-10-21T11:40:23Z",
"updated_at": "2025-09-11T08:06:57Z",
"clone_url": "https://github.com/DatViseR/Vivid-Volcano.git",
"size": 32540,
"stargazers_count": 3,
"watchers_count": 3,
"language": "HTML",
"license": {
"key": "other",
"name": "Other",
"spdx_id": "NOASSERTION",
"url": null,
"node_id": "MDc6TGljZW5zZTA="
},
"subscribers_count": 1,
"owner": {
"html_url": "https://github.com/DatViseR",
"avatar_url": "https://avatars.githubusercontent.com/u/64078730?v=4",
"login": "DatViseR",
"type": "User"
},
"topics": [
"bioinformatics",
"genomics-visualization",
"gsea",
"life-sciences",
"omics",
"proteomics",
"rnaseq",
"volcano-plot"
],
"timestamp": "2025-09-21 00:52:45.257821",
"avatar": "https://avatars.githubusercontent.com/u/64078730?v=4"
}
}
53 changes: 53 additions & 0 deletions database/github/Ecogenomics/GTDBTk/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,53 @@
{
"parser": "github",
"uid": "github/Ecogenomics/GTDBTk",
"url": "https://github.com/Ecogenomics/GTDBTk",
"data": {
"title": "GTDBTk",
"url": "https://github.com/Ecogenomics/GTDBTk",
"credit": [],
"tags": [
"metagenomic-sequencing-analysis",
"high-throughput-sequencing"
],
"description": "GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.",
"name": "GTDBTk",
"full_name": "Ecogenomics/GTDBTk",
"html_url": "https://github.com/Ecogenomics/GTDBTk",
"created_at": "2016-11-29T05:29:48Z",
"updated_at": "2025-09-17T10:46:10Z",
"clone_url": "https://github.com/Ecogenomics/GTDBTk.git",
"homepage": "https://ecogenomics.github.io/GTDBTk/",
"size": 30557,
"stargazers_count": 542,
"watchers_count": 542,
"language": "Python",
"open_issues_count": 22,
"license": {
"key": "gpl-3.0",
"name": "GNU General Public License v3.0",
"spdx_id": "GPL-3.0",
"url": "https://api.github.com/licenses/gpl-3.0",
"node_id": "MDc6TGljZW5zZTk="
},
"subscribers_count": 20,
"owner": {
"html_url": "https://github.com/Ecogenomics",
"avatar_url": "https://avatars.githubusercontent.com/u/1404161?v=4",
"login": "Ecogenomics",
"type": "Organization"
},
"topics": [
"taxonomy",
"species-assignments",
"phylogenetics",
"archaea",
"bacteria",
"nomenclature",
"bioinformatics",
"metagenomics"
],
"timestamp": "2025-09-21 00:54:18.729797",
"avatar": "https://avatars.githubusercontent.com/u/1404161?v=4"
}
}
35 changes: 35 additions & 0 deletions database/github/Feng-Ji-Lab/FedIRT/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
{
"parser": "github",
"uid": "github/Feng-Ji-Lab/FedIRT",
"url": "https://github.com/Feng-Ji-Lab/FedIRT",
"data": {
"doi": "https://doi.org/10.5281/zenodo.16691211",
"name": "FedIRT",
"url": "https://github.com/Feng-Ji-Lab/FedIRT",
"full_name": "Feng-Ji-Lab/FedIRT",
"html_url": "https://github.com/Feng-Ji-Lab/FedIRT",
"created_at": "2024-04-04T19:26:29Z",
"updated_at": "2025-08-20T12:58:11Z",
"clone_url": "https://github.com/Feng-Ji-Lab/FedIRT.git",
"size": 9624,
"stargazers_count": 1,
"watchers_count": 1,
"language": "R",
"open_issues_count": 6,
"license": {
"key": "mit",
"name": "MIT License",
"spdx_id": "MIT",
"url": "https://api.github.com/licenses/mit",
"node_id": "MDc6TGljZW5zZTEz"
},
"owner": {
"html_url": "https://github.com/Feng-Ji-Lab",
"avatar_url": "https://avatars.githubusercontent.com/u/166061424?v=4",
"login": "Feng-Ji-Lab",
"type": "Organization"
},
"timestamp": "2025-09-21 00:52:40.932119",
"avatar": "https://avatars.githubusercontent.com/u/166061424?v=4"
}
}
35 changes: 35 additions & 0 deletions database/github/JosephIsaacTurner/pypaperretriever/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
{
"parser": "github",
"uid": "github/JosephIsaacTurner/pypaperretriever",
"url": "https://github.com/JosephIsaacTurner/pypaperretriever",
"data": {
"doi": "https://doi.org/10.5281/zenodo.17029480",
"name": "pypaperretriever",
"url": "https://github.com/JosephIsaacTurner/pypaperretriever",
"full_name": "JosephIsaacTurner/pypaperretriever",
"html_url": "https://github.com/JosephIsaacTurner/pypaperretriever",
"created_at": "2024-05-13T22:23:42Z",
"updated_at": "2025-09-06T19:11:33Z",
"clone_url": "https://github.com/JosephIsaacTurner/pypaperretriever.git",
"size": 11636,
"stargazers_count": 5,
"watchers_count": 5,
"language": "Jupyter Notebook",
"license": {
"key": "mit",
"name": "MIT License",
"spdx_id": "MIT",
"url": "https://api.github.com/licenses/mit",
"node_id": "MDc6TGljZW5zZTEz"
},
"subscribers_count": 1,
"owner": {
"html_url": "https://github.com/JosephIsaacTurner",
"avatar_url": "https://avatars.githubusercontent.com/u/124412177?v=4",
"login": "JosephIsaacTurner",
"type": "User"
},
"timestamp": "2025-09-21 00:52:41.248988",
"avatar": "https://avatars.githubusercontent.com/u/124412177?v=4"
}
}
37 changes: 37 additions & 0 deletions database/github/OHDSI/omock/metadata.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,37 @@
{
"parser": "github",
"uid": "github/OHDSI/omock",
"url": "https://github.com/OHDSI/omock",
"data": {
"doi": "https://doi.org/10.5281/zenodo.17025756",
"name": "omock",
"url": "https://github.com/OHDSI/omock",
"full_name": "OHDSI/omock",
"html_url": "https://github.com/OHDSI/omock",
"created_at": "2024-02-19T16:15:30Z",
"updated_at": "2025-09-16T17:55:40Z",
"clone_url": "https://github.com/OHDSI/omock.git",
"homepage": "https://ohdsi.github.io/omock/",
"size": 28825,
"stargazers_count": 2,
"watchers_count": 2,
"language": "HTML",
"open_issues_count": 16,
"license": {
"key": "apache-2.0",
"name": "Apache License 2.0",
"spdx_id": "Apache-2.0",
"url": "https://api.github.com/licenses/apache-2.0",
"node_id": "MDc6TGljZW5zZTI="
},
"subscribers_count": 6,
"owner": {
"html_url": "https://github.com/OHDSI",
"avatar_url": "https://avatars.githubusercontent.com/u/6570077?v=4",
"login": "OHDSI",
"type": "Organization"
},
"timestamp": "2025-09-21 00:52:44.361199",
"avatar": "https://avatars.githubusercontent.com/u/6570077?v=4"
}
}
Loading