Update from update/software-2025-12-14

database/github/AaronFeller/p2smi/metadata.json

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database/github/AuReMe/emapper2gbk/metadata.json

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+        "description": "Convert GFF, fastas, annotation table and species name into Genbank.",
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+        "avatar": "https://avatars.githubusercontent.com/u/45785570?v=4"
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database/github/AuReMe/mpwt/metadata.json

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+        "description": "Pathway Tools multiprocessing wrapper (for PathoLogic).",
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+        "updated_at": "2025-11-26T09:44:23Z",
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database/github/AuReMe/prolipipe/metadata.json

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+        "description": "  The prolific pipeline is about genome annotation and metabolic pathway reconstruction. From .fasta genomes, it enables to find if strains of bacteria are theorically able to produce metabolites",
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database/github/AyehBlk/RAPTOR/metadata.json

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+{
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+    "url": "https://github.com/AyehBlk/RAPTOR",
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+        "full_name": "AyehBlk/RAPTOR",
+        "html_url": "https://github.com/AyehBlk/RAPTOR",
+        "private": false,
+        "description": "RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.",
+        "created_at": "2025-11-10T11:24:37Z",
+        "updated_at": "2025-12-13T15:23:48Z",
+        "clone_url": "https://github.com/AyehBlk/RAPTOR.git",
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+        "license": {
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+            "name": "MIT License",
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+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
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+            "login": "AyehBlk",
+            "type": "User"
+        },
+        "topics": [
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+            "bulk-rna-seq",
+            "deseq2",
+            "differential-expression-analysis",
+            "edger",
+            "featurecounts",
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+            "kallisto",
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+            "machine-learning",
+            "pipeline-benchmarking",
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+            "python",
+            "rna-seq",
+            "rna-seq-pipeline",
+            "salmon",
+            "streamlit",
+            "transcriptomics"
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+        "timestamp": "2025-12-14 00:58:57.839168",
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database/github/BigDataBiology/macrel/metadata.json

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+{
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+    "uid": "github/BigDataBiology/macrel",
+    "url": "https://github.com/BigDataBiology/macrel",
+    "data": {
+        "title": "Macrel",
+        "url": "https://github.com/BigDataBiology/macrel",
+        "credit": [],
+        "tags": [
+            "metagenomic-sequencing-analysis",
+            "high-throughput-sequencing",
+            "genomics"
+        ],
+        "description": "Predict AMPs in (meta)genomes and peptides",
+        "name": "macrel",
+        "full_name": "BigDataBiology/macrel",
+        "html_url": "https://github.com/BigDataBiology/macrel",
+        "created_at": "2019-07-01T02:35:37Z",
+        "updated_at": "2025-11-24T07:04:29Z",
+        "clone_url": "https://github.com/BigDataBiology/macrel.git",
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+            "url": null,
+            "node_id": "MDc6TGljZW5zZTA="
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+            "login": "BigDataBiology",
+            "type": "Organization"
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+            "genomics",
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+        "timestamp": "2025-12-14 01:01:02.146687",
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database/github/CCIG-Champalimaud/metadata-classification/metadata.json

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+{
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+        "name": "metadata-classification",
+        "url": "https://github.com/CCIG-Champalimaud/metadata-classification",
+        "full_name": "CCIG-Champalimaud/metadata-classification",
+        "html_url": "https://github.com/CCIG-Champalimaud/metadata-classification",
+        "description": "DICOM sequence classification for automatic dataset curation using metadata tags.",
+        "created_at": "2024-08-08T16:16:32Z",
+        "updated_at": "2025-12-03T10:16:39Z",
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database/github/CNES/lenapy/metadata.json

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+        "description": "Geophysical analysis in Python with xarray",
+        "created_at": "2024-04-22T08:29:37Z",
+        "updated_at": "2025-12-03T11:00:28Z",
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+            "gravity",
+            "oceanography",
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