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Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLO

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLO

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ryan-odea/README.md

Hi there! Welcome to my Github👋

Packages

Epidemiology

  • Downloads pySEQTarget: Python equivalent of SEQTaRget
  • Downloads SEQTaRget: Observational analogs of the ITT and per-protocol effects of hypothetical treatments strategies
  • Downloads gfoRmulaICE: Parametric iterative conditional expectation G-Formula
  • Downloads pytruncreg: Estimation of one-way truncated gaussian regression models and hessian via maximum likelihood
  • Downloads pygformula: Estimation of the risk or mean of an outcome under hypothetical treatment strategies
  • Downloads Learner Latent space transfer learning methods for low-rank matrix estimation
  • Downloads learner-py: Python implementation for LEARNER
  • Downloads CompRiskReg: Python translation of R's cmprsk

Time Resolved Serial Crystallography

  • Downloads hatTrick: Hadamard encoding and decoding of crystallographic data
  • Downloads storageCat: Easy data archival storage to scicat
  • Downloads TRSFX: Indexing and collection of tools to analyze time resolved crystallography

Misc

  • Downloads circles: Lightweight package for drawing circular objects

Publications

  • Static Badge McGrath S, Zhu C, O'Dea R, Guo M, Duan R. LEARNER: A Transfer Learning Method for Low-Rank Matrix Estimation. [Preprint] arXiv:2412.20605
  • Static Badge Zwick H, O’Dea R, Barocas JA, et al. Health and Economic Outcomes of Addressing Encampments of Individuals Using Opioids. JAMA Netw Open. 2025;8(6):e2517095. doi:10.1001/jamanetworkopen.2025.17095
  • Static Badge Feder NM, O’Dea R, Zupa M, Luo J. Prescriptions and Reimbursement of Glucagon Products for Severe Hypoglycemia in Medicaid. JAMA. Published online January 08, 2025. doi:10.1001/jama.2024.25974
  • Static Badge Chatterjee A, Stewart EA, Assoumou SA, et al. Health and Economic Outcomes of Offering Buprenorphine in Homeless Shelters in Massachusetts. JAMA Netw Open. 2024;7(10):e2437233. doi:10.1001/jamanetworkopen.2024.37233

Presentations

  • Static Badge Aug 2026 at Joint Statistical Meetings (JSM). LEARNER: A transfer learning method for low-rank matrix estimation [Paper Presentation]. McGrath S, Zhu C, O'Dea R, Guo M, Duan R.
  • Static Badge April 2026 at Together For Hope. Medication for opioid use disorder initiation and discontinuation in pregnant and post-partum people in Massachusetts, 2014-2022 [Poster Presentation]. Epstein et al.
  • Static Badge February 2026 at ESRF (European Synchrotron Radiation Facility). Hadamard Transform Recovers Reaction Kinetics in Time Resolved Serial Crystallography [Poster Presentation]. O'Dea R, Weinert T.
  • Static Badge October 2024 at INHSU (International Network on Health and Hepatitis in Substance Users). Estimation of Opioid Use Disorder Prevalence Under Unique Data Scenarios: A Simulation Study [Poster Presentation]. O'Dea R, White LF, Barocas J, Linas B, Wang J.
  • Static Badge May 2024 at SGIM (Society of General Internal Medicine). Utilization and Reimbursement of Glucagon Products for Severe Hypoglycemia in Medicaid: 2012-2022 [Poster Presentation]. Feder N, O'Dea R, Zupa M, Luo J.

Teaching

  • Static Badge Teaching Fellow with University of Zurich: Artificial Intelligence and Deep Learning the the Life Sciences
  • Static Badge Teaching Fellow with Harvard University: High Performance Computing

Gallery Showcases

Pinned Loading

  1. CausalInference/pygformula CausalInference/pygformula Public

    The pygformula implements the parametric g-formula in Python. The parametric g-formula (Robins, 1986) uses longitudinal data with time-varying treatments and confounders to estimate the risk or mea…

    Python 33 6

  2. CausalInference/gfoRmulaICE CausalInference/gfoRmulaICE Public

    Implements iterative conditional expectation (ICE) estimators of the plug-in g-formula

    R 9 4

  3. stmcg/learner stmcg/learner Public

    Latent Space-Based Transfer Learning

    R 1 1

  4. pylearner pylearner Public

    Python implementation of Latent Space-Based Transfer Learning

    C++ 1

  5. CausalInference/SEQTaRget CausalInference/SEQTaRget Public

    Estimation of the observational analogs of the intention-to-treat and per-protocol effects of hypothetical treatment strategies

    R 7 4

  6. CausalInference/pySEQTarget CausalInference/pySEQTarget Public

    Estimation of the observational analogs of the intention-to-treat and per-protocol effects of hypothetical treatment strategies

    Python 2