Skip to content

[BG] Fix issues with scil_label_map #1275

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
arnaudbore wants to merge 2 commits into
base: master
Choose a base branch
from
+3 −2
Open

[BG] Fix issues with scil_label_map #1275

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
0c381e9
fix issues from Aurelie tests
arnaudbore Nov 5, 2025
7dbad23
switch to to_center
arnaudbore Nov 5, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 2 additions & 1 deletion src/scilpy/cli/scil_bundle_label_map.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -272,7 +272,8 @@ def main():
concat_sft.to_corner()
for i in range(len(sft_list)):
sft_list[i] = cut_streamlines_with_mask(sft_list[i],
binary_mask)
binary_mask,
cutting_style=CuttingStyle.KEEP_LONGEST)

sft_list[i] = filter_streamlines_by_nb_points(sft_list[i],
min_nb_points=4)
Expand Down
2 changes: 1 addition & 1 deletion src/scilpy/tractograms/streamline_and_mask_operations.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -324,7 +324,7 @@ def cut_streamlines_with_mask(sft, mask,
orig_space = sft.space
orig_origin = sft.origin
sft.to_vox()
sft.to_corner()
sft.to_center()

# Get the indices of the voxels
# intersected by the streamlines and the mapping from points to indices
Expand Down
Loading