Authors: Francesco Bettella and Dawid Rasinski
NOTE: this software is still in experimental phase and comes as is with no warranty of sort. [for general enquiries contact the author Francesco Bettella at checco74@gmail.com]
the source code contained in this directory allows to compile the SPARROW software for protein secondary structure prediction. SPARROW predicts protein secondary structure based on a position specific scoring matrix (PSI-BLAST profile). if PSI-BLAST is installed in your system, it's possible to perform predictions based on a sequence of amino acids (in FASTA format).
git clone https://github.uio.no/****/sparrow
cd sparrow
make
run the C-shell (requires tcsh to be installed) script run_sparrow-nn.sh.
for a brief help on the available features run with -h option.