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27 changes: 27 additions & 0 deletions packages/flashdeconv/meta.yaml
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name: flashdeconv
description: |
FlashDeconv is a high-performance spatial transcriptomics deconvolution tool that enables cell type mapping
at atlas scale. Using structure-preserving sketching via randomized numerical linear algebra, FlashDeconv
achieves linear time and memory complexity, processing 1 million spots in approximately 3 minutes on a
standard laptop without GPU. It provides accurate cell type proportion estimation with Pearson r = 0.944
on the Spotless benchmark, and preserves rare cell type detection through leverage-score weighted sampling.
project_home: https://github.com/cafferychen777/flashdeconv
documentation_home: https://github.com/cafferychen777/flashdeconv#readme
tutorials_home: https://github.com/cafferychen777/flashdeconv/tree/main/examples
publications:
- 10.64898/2025.12.22.696108
install:
pypi: flashdeconv
tags:
- spatial transcriptomics
- deconvolution
- cell type
- Visium HD
- sketching
license: BSD-3-Clause
version: v0.1
contact:
- cafferychen777
test_command: |
pip install ".[test]" && pytest
category: ecosystem