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Add anndata-duckdb extension #327

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7adee56
Add anndata-duckdb extension
honicky Jan 11, 2026
699f696
Merge branch 'main' into add-anndata-duckdb
honicky Jan 20, 2026
f0812d9
Merge branch 'main' into add-anndata-duckdb
honicky Feb 4, 2026
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22 changes: 22 additions & 0 deletions packages/anndata-duckdb/meta.yaml
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name: anndata-duckdb
description: |
A DuckDB extension for reading AnnData (.h5ad) files, providing SQL access to
single-cell genomics data. Query observation metadata, gene metadata, expression
matrices, dimensional reductions, and layers directly with SQL. Install DuckDB,
then run: INSTALL anndata; LOAD anndata;
project_home: https://github.com/honicky/anndata-duckdb-extension
documentation_home: https://github.com/honicky/anndata-duckdb-extension#readme
install:
pypi: duckdb
conda: conda-forge::duckdb
tags:
- SQL
- DuckDB
- data access
- single-cell
- HDF5
license: MIT
version: 0.11.5
contact:
- honicky
category: ecosystem