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29 Open 253 Closed
29 Open 253 Closed
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Issues list

buggy defaults for plot_multicomparison_fc bug Something isn't working
#755 opened Apr 30, 2025 by emdann
2 of 3 tasks
gdsc and prism annotation warnings bug Something isn't working
#753 opened Apr 28, 2025 by Zethson
@Lilly-May
_milo.py: annotate adata from mdata enhancement New feature or request
#751 opened Apr 26, 2025 by brainfo
pubchempy.TimeoutError: 'PUGREST.Timeout' bug Something isn't working
#750 opened Apr 25, 2025 by MUCDK
@Zethson
2
FutureWarnings concerning mudata 0.4 changes concerning .update() bug Something isn't working
#749 opened Apr 23, 2025 by mschilli87
@Zethson
milo mixed effect models enhancement New feature or request
#747 opened Apr 17, 2025 by liezeltamon
Move differential expression analysis to separate package enhancement New feature or request
#730 opened Mar 19, 2025 by grst
2
pertpy Installation Fails on Google Colab Due to numpy AttributeError bug Something isn't working
#724 opened Mar 8, 2025 by LCGaoZzz
1
DIALOGUE v2 enhancement New feature or request
#723 opened Mar 6, 2025 by Zethson
4 tasks
Suggestion for a better layout of coda plot_boxplots() subplots enhancement New feature or request
#718 opened Feb 27, 2025 by shihsama
1
Model doesn't complain if a complex interaction contrast is specified that wasn't fit with the interaction in the design bug Something isn't working
#693 opened Jan 4, 2025 by Zethson
Milo neighborhood groups as in MiloR enhancement New feature or request
#680 opened Nov 21, 2024 by MaximilianNuber
1
target col naming for perturbation spaces bug Something isn't working
#673 opened Oct 17, 2024 by Zethson
Feature pertpy use-cases in our tutorial enhancement New feature or request
#642 opened Aug 19, 2024 by Zethson
@Lilly-May
1
possible to compute distances on a subset of genes? enhancement New feature or request
#640 opened Aug 14, 2024 by aterceros
@Zethson
3
Implement MiloDE (diff. expr. testing on top of milo framework) enhancement New feature or request
#635 opened Jul 30, 2024 by stefanpeidli
Update docs with new comparison metrics enhancement New feature or request
#630 opened Jun 24, 2024 by wxicu
FindConservedMarkers implementaion enhancement New feature or request
#629 opened Jun 22, 2024 by SNOL2
1
Improve DE tutorial enhancement New feature or request
#615 opened May 27, 2024 by grst
@Zethson
1
Add linear mixed effects model to DE interface enhancement New feature or request
#614 opened May 27, 2024 by grst
Parallelize DE methods that support it enhancement New feature or request
#613 opened May 27, 2024 by grst
HTML widget for DE Model classes enhancement New feature or request
#611 opened May 27, 2024 by grst
annotate_compounds for combinations of drugs enhancement New feature or request
#582 opened Apr 9, 2024 by MUCDK
@wxicu
2
Streamlining Distance API enhancement New feature or request
#416 opened Oct 31, 2023 by Zethson
@yugeji @Zethson
@stefanpeidli @tessadgreen @mojtababahrami @Lilly-May
5
Conda package enhancement New feature or request
#294 opened Jun 20, 2023 by Nusob888
@mschilli87
9
ProTip! Find all open issues with in progress development work with linked:pr.