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Releases: skandlab/VarNet

v1.5.2

10 Feb 03:00

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  • Parallelize make_vcf() for faster VCF generation
  • Minor speed improvements in snvs/predict.py and indels/predict.py in prefetching reads

v1.5.1

02 Feb 04:40

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  • Reduce memory use in indel predict by reducing region size for prefetching reads to 250 kbp
  • Reduce default batch size for predictions to 64 (--batch_size 64)

v1.5.0

30 Jan 03:51

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Significant speed improvements in filtering and prediction using read caching to reduce I/O

v1.4.0

16 Jan 05:17

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Speed up SNV filtering using numpy vectorization

v1.3.0

13 Jan 06:17

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Significantly faster SNV and indel prediction using batch predictions.
Adjustable --batch-size (default 1000) arg provided to predict.py

v1.2.0

17 Dec 05:10

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indel predicition fix

v1.1.0

17 Dec 05:08

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github release edits