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Update documentation#74

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skent259 merged 10 commits intomainfrom
update-docs
Aug 14, 2025
Merged

Update documentation#74
skent259 merged 10 commits intomainfrom
update-docs

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Fix two CRAN NOTEs and update to more recent roxygen2 version

Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
formatting.Rd: print.tbl
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.

The Description field contains
arXiv:2206.14704; Xiao, Liu, and Hao (2018)
Please refer to arXiv e-prints via their arXiv DOI doi:10.48550/arXiv.YYMM.NNNNN.

* Fix CRAN note "Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  formatting.Rd: print.tbl"
Should fix incoming cran NOTE
Couldn't figure out if this is R version or packages (doesn't seem to be package dependency).

Ultimately the predictions are nearly identical and perform well so assume this is fine
* No longer able to test gurobi locally
* Some minor changes due to tibble printing, arrange default column order, etc
* Don't have pROC::auc print out message
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Note that I have lost access to gurobi and must remove the examples that need it from the snapshots

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Unsure why svor_exc() has it's predictions change. I checked and it doesn't seem to rely on external packages, which means this is possibly from a base R update. Overall, the performance is nearly the same and high, so this is probably fine

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Also includes minor updates to functions, snapshot tests, and Github actions to accomodate newer versions of other packages (in particular, dplyr, tibble, testthat)

@skent259 skent259 merged commit 486ab12 into main Aug 14, 2025
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