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34 Open 17 Closed
34 Open 17 Closed
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Issues list

Performance recommendations for running PenguiN on high-RAM servers with HDDs
#54 opened May 2, 2025 by Enkabloza
PenguiN Reproducibility
#53 opened Dec 26, 2024 by MTDouglas
Manual PenguiN
#52 opened Dec 24, 2024 by SergeyBaikal
Penguin performance for ITS/18S assembly and potential implementation for metagenome binning?
#51 opened Dec 20, 2024 by metaganal
SNPs introduced when using high --max-iterations
#50 opened Nov 1, 2024 by Markusjsommer
Feature requests: (Un)trusted contigs and mixed read types support
#49 opened Sep 13, 2024 by ohickl
Data Access
#48 opened Aug 24, 2024 by shengxiaobufu
1
Penguin: no assembled contigs
#47 opened Aug 14, 2024 by cv-1993
Insights needed for comparison with other assemblers
#46 opened Apr 16, 2024 by GeoMicroSoares
1
Quality trimming reads?
#44 opened Feb 19, 2024 by timghaly
2
mmseqs extractorfs can tranlate orfs but CLI does not allow to specify tranlation table
#42 opened Mar 10, 2023 by SilasK
2
Quantification
#40 opened Jan 23, 2023 by stheil15
Paired read prediction - mergereads failed
#38 opened Mar 11, 2022 by dnolin13
3
Install issues
#37 opened Jan 14, 2022 by slschnorr
6
Use PLASS in metatranscriptomic data
#35 opened Feb 23, 2021 by jjsanchezgil
5
Empty (len:0) sequences in plass output
#33 opened Feb 18, 2021 by aleixop
4
Some Issues about the length of protein sequences
#31 opened Nov 13, 2020 by susutBu
2
The output file is empty
#29 opened Aug 3, 2020 by Sami-Altayyar
1
Use Plass for euk metagenomics data
#28 opened Jul 15, 2020 by liuxianghui
2
Error running mpi job with class
#27 opened Jun 10, 2020 by liuxianghui
1
missing handling of small number of input reads
#26 opened May 25, 2020 by mr-eyes
7
map of input sequences to assembled sequence enhancement New feature or request
#25 opened May 18, 2020 by galicae
Using already predicted ORFs from reads
#24 opened Apr 5, 2020 by genomewalker
4
MPI local-tmp
#23 opened Apr 5, 2020 by genomewalker
1
Final output file size 0
#22 opened Feb 20, 2020 by taylorreiter
2
ProTip! Adding no:label will show everything without a label.