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@That-Thing
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Adds filtering by samples to the /vcf/fetch endpoint.
Samples can be given to the api with the ?samples url query parameter (e.g ?samples=PI86046?samples=PI90208?samples=PI219698)

@matthewwiese
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Hi Simon! I looked over the PR. Before the govt shutdown we had discussed here that I had implemented this in our microservices already (finish_fasta_api branch)

My only suggestion is to rename the /strains endpoint to /vcf/samples for consistency with our version.

cc @ctcncgr

@That-Thing
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My only suggestion is to rename the /strains endpoint to /vcf/samples for consistency with our version.

Done

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@StevenCannon-USDA StevenCannon-USDA left a comment

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Given the review from @matthewwiese, I am going to approve and merge this branch.

@StevenCannon-USDA StevenCannon-USDA merged commit 1ec6786 into master Dec 17, 2025
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@StevenCannon-USDA StevenCannon-USDA deleted the strain-filtering branch December 17, 2025 14:44
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4 participants