kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
In data directory, tool searches for .fastq.gz sequencing files and .fasta reference sequences.
Number of Threads
- Number of cores used by featureCounts. If not specified, will use all available.
Type of Sequencing
- Single or Paired Ended reads
Length of Fragment
Standard Deviation of Fragment
Number of Bootstraps k > 0
Kmer Size for DeBruijn Graph Int < 31 (Odd)
Prefix for Bus File
Chemistry Type - See Drop Down Menu
https://pachterlab.github.io/kallisto/about
.tsv: Output Counts Matrix .h5 .json Logging information