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6 changes: 3 additions & 3 deletions eval/tools/bpipe/0.9.9.6/bpipe.config
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ tools {
install = """
mkdir -p tools/bwa
cd tools/bwa
curl -o bwa.tar.bz2 'http://internode.dl.sourceforge.net/project/bio-bwa/bwa-0.7.12.tar.bz2'
curl -L -o bwa.tar.bz2 'http://internode.dl.sourceforge.net/project/bio-bwa/bwa-0.7.12.tar.bz2'
tar -xjf bwa.tar.bz2
cd bwa-*
make
Expand All @@ -43,7 +43,7 @@ tools {
install = """
mkdir -p tools/xhmm
cd tools/xhmm
curl -o master.zip https://bitbucket.org/statgen/xhmm/get/master.zip
curl -L -o master.zip https://bitbucket.org/statgen/xhmm/get/master.zip
unzip -o master.zip
mv statgen* trunk
cd trunk
Expand Down Expand Up @@ -105,7 +105,7 @@ tools {
install = """
mkdir -p tools/conifer
cd tools/conifer
curl -o 'conifer-0.2.2.tar.gz' 'http://internode.dl.sourceforge.net/project/conifer/CoNIFER%200.2.2/conifer_v0.2.2.tar.gz'
curl -L -o 'conifer-0.2.2.tar.gz' 'http://internode.dl.sourceforge.net/project/conifer/CoNIFER%200.2.2/conifer_v0.2.2.tar.gz'
tar -xzf conifer-0.2.2.tar.gz
mv conifer_v0.2.2 0.2.2
"""
Expand Down