python_ALE: First stab.#48

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wwood wants to merge 15 commits intossolo:masterfrom

wwood:python_ALE

Commits on Mar 20, 2026

python_ALE: First stab.
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Fix PR review issues: MH acceptance, rate multiplier ordering, and bip test

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Implement per-branch rate multiplier optimization in ALEml_undated

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Fix MCMC transfer accumulation, ALEevaluate totals, and add S_with_ranks

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Fix optimizer gate, no_T sampling bias, alpha smoothing, and Dip_counts access

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Fix MCMC robustness issues and mark slow tests

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Defer numpy import, handle singleton trees, add build dep to test task

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Fix singleton tree parsing, ALEadd subsampling order, and optimizer bounds

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Tighten singleton tree parsing and add build dep to test-fast

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Handle singleton trees like C++: build one-leaf ALE and return immediately

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Add tests for singleton tree observation and mixed singleton/tree files

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