Supporting data

Accompanies the paper "Fast decisions with biophysically constrained promoter architectures", Tohme, T., Vergassola, M., Mora, T., and Walczak, A. M., https://arxiv.org/abs/2507.03720

To reproduce plots from the repository's data

Install the following dependencies:

• numpy
• matplotlib
• json

Figures in the main text can be reproduced by running the figures.ipynb notebook.

To generate the data

A tutorial for how to install and run Julia, as well as the optimization code for generating the data will be available soon.