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10 changes: 10 additions & 0 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -35,3 +35,13 @@ RUN cp /root/bamUtil/bin/bam /usr/bin/bam-non-primary-dedup
RUN git --git-dir=/root/bamUtil/.git --work-tree=/root/bamUtil checkout b6e4a7de6b7ce08d488f539ada4f1717cd4d12e4 #ExternalMemorySortManager
RUN make -C /root/bamUtil
RUN cp /root/bamUtil/bin/bam /usr/bin/bam-ext-mem-sort-manager

RUN groupadd datacommons; groupadd docker \
&& useradd -m dockeruser -g docker -s /bin/bash \
&& echo "dockeruser ALL=(ALL) NOPASSWD:ALL" > /etc/sudoers.d/docker

RUN chmod 777 -R /root
RUN chmod 777 -R /usr
RUN chown dockeruser:docker /tmp; chown dockeruser:docker /usr
USER dockeruser
WORKDIR /home/dockeruser