Prostt5 ctranslate2 splitting long sequenes#327
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mpjw wants to merge 23 commits intosteineggerlab:prostt5-ctranslate2from
Open
Prostt5 ctranslate2 splitting long sequenes#327mpjw wants to merge 23 commits intosteineggerlab:prostt5-ctranslate2from
mpjw wants to merge 23 commits intosteineggerlab:prostt5-ctranslate2from
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added 23 commits
August 6, 2024 21:13
…e length bug in the 3Di predictions
…ing splitting functionality
…ute once CUDA build is fixed
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Functionality to predict AA sequences that are longer than ProstT5 attention with a split-wise approach.
Sequences will be split if longer than --prostt5-split-length (default 6000, deactivate with 0), and the prediction of splits will be concatenated.
Test cases include one file with a 500 split length and one with a 6000 split length.
Additionally, a conda environment was created for compiling this branch with CUDA.