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Add turbulent stress diagnostics for studying zonal flow physics. #232

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Add turbulent stress diagnostics for studying zonal flow physics. #232

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3 changes: 2 additions & 1 deletion COMPILATION/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -67,7 +67,8 @@ set(STELLA_SOURCES_f90
../STELLA_CODE/diagnostics/diagnostics_fluxes_fluxtube.f90
../STELLA_CODE/diagnostics/diagnostics_fluxes_fullfluxsurface.f90
../STELLA_CODE/diagnostics/diagnostics_fluxes_radialvariation.f90
../STELLA_CODE/diagnostics/diagnostics_fluxes.f90
../STELLA_CODE/diagnostics/diagnostics_fluxes.f90
../STELLA_CODE/diagnostics/diagnostics_stresses.f90
../STELLA_CODE/diagnostics/diagnostics_moments.f90
../STELLA_CODE/diagnostics/diagnostics_omega.f90
../STELLA_CODE/diagnostics/diagnostics_potential.f90
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25 changes: 25 additions & 0 deletions COMPILATION/Makefile.depend
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Expand Up @@ -34,6 +34,7 @@ stella_mod = \
$(OBJ_DIR)/diagnostics_moments.o \
$(OBJ_DIR)/diagnostics_omega.o \
$(OBJ_DIR)/diagnostics_potential.o \
$(OBJ_DIR)/diagnostics_stresses.o \
$(OBJ_DIR)/diagnostics_write_radial_grid.o \
$(OBJ_DIR)/dissipation_and_collisions.o \
$(OBJ_DIR)/dissipation_hyper.o \
Expand Down Expand Up @@ -302,6 +303,7 @@ $(OBJ_DIR)/diagnostics.o: \
$(OBJ_DIR)/diagnostics_moments.o \
$(OBJ_DIR)/diagnostics_omega.o \
$(OBJ_DIR)/diagnostics_potential.o \
$(OBJ_DIR)/diagnostics_stresses.o \
$(OBJ_DIR)/dissipation_and_collisions.o \
$(OBJ_DIR)/field_equations.o \
$(OBJ_DIR)/git_version.o \
Expand Down Expand Up @@ -466,6 +468,29 @@ $(OBJ_DIR)/diagnostics_potential.o: \
$(OBJ_DIR)/parameters_diagnostics.o \
$(OBJ_DIR)/parameters_physics.o \
$(OBJ_DIR)/write_diagnostics_to_netcdf.o
$(OBJ_DIR)/diagnostics_stresses.o: \
$(OBJ_DIR)/arrays.o \
$(OBJ_DIR)/arrays_distribution_function.o \
$(OBJ_DIR)/arrays_fields.o \
$(OBJ_DIR)/calculations_gyro_averages.o \
$(OBJ_DIR)/calculations_kxky_derivatives.o \
$(OBJ_DIR)/calculations_tofrom_ghf.o \
$(OBJ_DIR)/calculations_transforms.o \
$(OBJ_DIR)/calculations_velocity_integrals.o \
$(OBJ_DIR)/constants.o \
$(OBJ_DIR)/geometry.o \
$(OBJ_DIR)/gk_flow_shear.o \
$(OBJ_DIR)/grids_kxky.o \
$(OBJ_DIR)/grids_species.o \
$(OBJ_DIR)/grids_velocity.o \
$(OBJ_DIR)/grids_z.o \
$(OBJ_DIR)/initialise_redistribute.o \
$(OBJ_DIR)/mp.o \
$(OBJ_DIR)/parallelisation_layouts.o \
$(OBJ_DIR)/parameters_diagnostics.o \
$(OBJ_DIR)/parameters_physics.o \
$(OBJ_DIR)/redistribute.o \
$(OBJ_DIR)/write_diagnostics_to_netcdf.o
$(OBJ_DIR)/diagnostics_write_radial_grid.o: \
$(OBJ_DIR)/file_utils.o \
$(OBJ_DIR)/geometry.o \
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6 changes: 6 additions & 0 deletions STELLA_CODE/diagnostics/diagnostics.f90
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Expand Up @@ -68,6 +68,10 @@
! write_moments = .false.
! write_radial_moments = .false.
!/
!
!&diagnostics_stresses
! write_stresses = .false.
!
!
!---------------------------------- Time traces --------------------------------
!
Expand Down Expand Up @@ -164,6 +168,7 @@ subroutine diagnose_distribution_function_and_fields(istep)
use diagnostics_fluxes, only: write_fluxes_to_netcdf_file
use diagnostics_moments, only: write_moments_to_netcdf_file
use diagnostics_distribution, only: write_distribution_to_netcdf_file
use diagnostics_stresses, only: write_stresses_to_netcdf_file
use write_diagnostics_to_netcdf, only: sync_nc

implicit none
Expand Down Expand Up @@ -222,6 +227,7 @@ subroutine diagnose_distribution_function_and_fields(istep)
! Write data to the netcdf files
call write_moments_to_netcdf_file(nout, time_individual_diagnostics(:, 5))
call write_distribution_to_netcdf_file(nout, time_individual_diagnostics(:, 6))
call write_stresses_to_netcdf_file(nout)

! Synchronize the disk copy of a netCDF dataset with in-memory buffers
if (proc0) call sync_nc
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