37 use the GitHub container registry to store images

.github/actions/install/struphy_in_container/action.yml

@@ -0,0 +1,26 @@
+name: "Install Struphy in Container"
+
+runs:
+  using: composite
+  steps:
+    - name: Git branch name
+      id: git-branch-name
+      uses: EthanSK/git-branch-name-action@v1
+    - name: Echo the branch name
+      shell: bash
+      run: echo "Branch name ${GIT_BRANCH_NAME}"
+    - name: Install struphy
+      shell: bash
+      run: |
+          ls / -a
+          which python3
+          cd /struphy_c_
+          git status
+          git fetch origin
+          echo ${GIT_BRANCH_NAME}
+          git checkout ${GIT_BRANCH_NAME}
+          git pull
+          source env_c_/bin/activate
+          which python3
+          struphy -p
+          pip install -e ".[phys,mpi,doc]"

.github/workflows/test-PR-models.yml

@@ -0,0 +1,72 @@
+name: PR - model tests in Container
+
+on:
+  pull_request:
+    branches:
+      - main
+      - devel
+  workflow_dispatch:
+
+defaults:
+  run:
+    shell: bash
+
+permissions:
+  contents: read
+
+# concurrency:
+#   group: "pages"
+#   cancel-in-progress: false
+
+jobs:
+  model-tests-in-container-with-struphy:
+    runs-on: ubuntu-latest
+    container:
+      image: ghcr.io/struphy-hub/struphy/ubuntu-with-struphy:latest
+      credentials:
+        username: spossann
+        password: ${{ secrets.GHCR_TOKEN }}
+    steps:
+
+      - name: Check for dockerenv file
+        run: (ls /.dockerenv && echo Found dockerenv) || (echo No dockerenv)
+
+      - name: Checkout repo
+        uses: actions/checkout@v4
+
+      - name: Install Struphy in Container
+        uses: ./.github/actions/install/struphy_in_container
+
+      - name: Compile Struphy
+        run: |
+          which python3
+          source /struphy_c_/env_c_/bin/activate
+          which python3
+          struphy compile --status
+          struphy compile
+
+      - name: Model tests
+        shell: bash
+        run: |
+          which python3
+          source /struphy_c_/env_c_/bin/activate
+          which python3
+          struphy compile --status
+          struphy test LinearMHD
+          struphy test toy
+          struphy test models 
+          struphy test verification 
+
+      - name: Model tests with  MPI
+        shell: bash
+        run: |
+          which python3
+          source /struphy_c_/env_c_/bin/activate
+          which python3
+          struphy compile --status
+          struphy test models 
+          struphy test models --mpi 2
+          struphy test verification --mpi 1
+          struphy test verification --mpi 4
+          struphy test verification --mpi 4 --nclones 2
+          struphy test VlasovAmpereOneSpecies --mpi 2 --nclones 2

.github/workflows/test-PR-unit.yml

@@ -0,0 +1,68 @@
+name: PR - unit tests in Container
+
+on:
+  pull_request:
+    branches:
+      - main
+      - devel
+  workflow_dispatch:
+
+defaults:
+  run:
+    shell: bash
+
+permissions:
+  contents: read
+
+# concurrency:
+#   group: "pages"
+#   cancel-in-progress: false
+
+jobs:
+  unit-tests-in-container-with-struphy:
+    runs-on: ubuntu-latest
+    container:
+      image: ghcr.io/struphy-hub/struphy/ubuntu-with-struphy:latest
+      credentials:
+        username: spossann
+        password: ${{ secrets.GHCR_TOKEN }}
+    steps:
+
+      - name: Check for dockerenv file
+        run: (ls /.dockerenv && echo Found dockerenv) || (echo No dockerenv)
+
+      - name: Checkout repo
+        uses: actions/checkout@v4
+
+      - name: Install Struphy in Container
+        uses: ./.github/actions/install/struphy_in_container
+
+      - name: Compile Struphy
+        run: |
+          which python3
+          source /struphy_c_/env_c_/bin/activate
+          which python3
+          struphy compile --status
+          struphy compile
+
+      - name: Run unit tests with MPI
+        shell: bash
+        run: |
+          which python3
+          source /struphy_c_/env_c_/bin/activate
+          which python3
+          struphy compile --status
+          struphy --refresh-models
+          struphy test unit --mpi 2
+
+      - name: Run unit tests
+        shell: bash
+        run: |
+          which python3
+          source /struphy_c_/env_c_/bin/activate
+          which python3
+          struphy compile --status
+          struphy --refresh-models
+          pip show mpi4py
+          pip uninstall -y mpi4py
+          struphy test unit

.github/workflows/ubuntu-latest.yml

@@ -1,20 +1,11 @@
-name: Ubuntu
+name: Ubuntu latest - cronjob
 on:
-  push:
-    branches:
-      - main
-      - devel
-  pull_request:
-    branches:
-      - main
-      - devel
-
-# concurrency:
-#   group: ${{ github.ref }}
-#   cancel-in-progress: true
+  schedule:
+    # run at 1 a.m. on Sunday
+    - cron: "0 1 * * 0" 
 
 jobs:
   ubuntu-latest-build:
-    uses: ./.github/workflows/testing.yml
+    uses: ./.github/workflows/reusable-testing.yml
     with:
       os: ubuntu-latest

docker/almalinux-latest.dockerfile

@@ -1,12 +1,13 @@
-# Here is how to build the image and upload it to the mpcdf gitlab registry:
+# Here is how to build the image and upload it to the Github package registry:
 #
 # We suppose you are in the struphy repo directory. 
-# Start the docker engine and run "docker login" with the following token:
+# Start the docker engine and login to the Github package registry using a github personal acces token (classic):
 #
-# TOKEN=gldt-CgMRBMtePbSwdWTxKw4Q; echo "$TOKEN" | docker login gitlab-registry.mpcdf.mpg.de -u gitlab+deploy-token-162 --password-stdin
+# export CR_PAT=YOUR_TOKEN
+# echo $CR_PAT | docker login ghcr.io -u USERNAME --password-stdin
 # docker info
-# docker build -t gitlab-registry.mpcdf.mpg.de/struphy/struphy/almalinux-latest --provenance=false -f docker/almalinux-latest.dockerfile .
-# docker push gitlab-registry.mpcdf.mpg.de/struphy/struphy/almalinux-latest
+# docker build -t ghcr.io/struphy-hub/struphy/almalinux-with-reqs:latest --provenance=false -f docker/almalinux-latest.dockerfile .
+# docker push ghcr.io/struphy-hub/struphy/almalinux-with-reqs:latest
 
 FROM almalinux:latest
 
@@ -42,9 +43,6 @@ RUN echo "Installing additional tools..." \
     && export CC=`which gcc` \ 
     && export CXX=`which g++`
 
-# create new working dir
-WORKDIR /install_struphy_here/
-
 # allow mpirun as root
 ENV OMPI_ALLOW_RUN_AS_ROOT=1
 ENV OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1

docker/fedora-latest.dockerfile

@@ -1,12 +1,13 @@
-# Here is how to build the image and upload it to the mpcdf gitlab registry:
+# Here is how to build the image and upload it to the Github package registry:
 #
 # We suppose you are in the struphy repo directory. 
-# Start the docker engine and run "docker login" with the following token:
+# Start the docker engine and login to the Github package registry using a github personal acces token (classic):
 #
-# TOKEN=gldt-CgMRBMtePbSwdWTxKw4Q; echo "$TOKEN" | docker login gitlab-registry.mpcdf.mpg.de -u gitlab+deploy-token-162 --password-stdin
+# export CR_PAT=YOUR_TOKEN
+# echo $CR_PAT | docker login ghcr.io -u USERNAME --password-stdin
 # docker info
-# docker build -t gitlab-registry.mpcdf.mpg.de/struphy/struphy/fedora-latest --provenance=false -f docker/fedora-latest.dockerfile .
-# docker push gitlab-registry.mpcdf.mpg.de/struphy/struphy/fedora-latest
+# docker build -t ghcr.io/struphy-hub/struphy/fedora-with-reqs:latest --provenance=false -f docker/fedora-latest.dockerfile .
+# docker push ghcr.io/struphy-hub/struphy/fedora-with-reqs:latest
 
 FROM fedora:latest
 
@@ -34,9 +35,6 @@ RUN echo "Installing additional tools..." \
     && export CC=`which gcc` \ 
     && export CXX=`which g++` 
 
-    # create new working dir
-WORKDIR /install_struphy_here/
-
 # allow mpirun as root
 ENV OMPI_ALLOW_RUN_AS_ROOT=1
 ENV OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1

docker/opensuse-latest.dockerfile

@@ -1,12 +1,13 @@
-# Here is how to build the image and upload it to the mpcdf gitlab registry:
+# Here is how to build the image and upload it to the Github package registry:
 #
 # We suppose you are in the struphy repo directory. 
-# Start the docker engine and run "docker login" with the following token:
+# Start the docker engine and login to the Github package registry using a github personal acces token (classic):
 #
-# TOKEN=gldt-CgMRBMtePbSwdWTxKw4Q; echo "$TOKEN" | docker login gitlab-registry.mpcdf.mpg.de -u gitlab+deploy-token-162 --password-stdin
+# export CR_PAT=YOUR_TOKEN
+# echo $CR_PAT | docker login ghcr.io -u USERNAME --password-stdin
 # docker info
-# docker build -t gitlab-registry.mpcdf.mpg.de/struphy/struphy/opensuse-latest --provenance=false -f docker/opensuse-latest.dockerfile .
-# docker push gitlab-registry.mpcdf.mpg.de/struphy/struphy/opensuse-latest
+# docker build -t ghcr.io/struphy-hub/struphy/opensuse-with-reqs:latest --provenance=false -f docker/opensuse-latest.dockerfile .
+# docker push ghcr.io/struphy-hub/struphy/opensuse-with-reqs:latest
 
 FROM opensuse/tumbleweed:latest
 
@@ -42,9 +43,6 @@ RUN echo "Installing additional tools..." \
     && export CXX=`which g++` \
     && zypper clean --all
 
-# Create a new working directory
-WORKDIR /install_struphy_here/
-
 # Allow mpirun to run as root (for OpenMPI)
 ENV OMPI_ALLOW_RUN_AS_ROOT=1
 ENV OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1