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The START-R suite is able to analyze all types of genome-wide RT data formats like microarray data, Repli-seq data with Early/Late and S/G1 ratios and RT data from multiple organisms.
The START-R suite was developed using the Shiny R package and Plotly visualisation tools. The START-R softwares (START-R Analyzer and START-R-viewer), are open source web-based applications. For the storage and production steps, the START-R suite was concatenated using Docker in order to install, use and share it easily. These softwares can be used with different operating systems: Windows, Mac OS and Linux. The source code and the installation procedure are available on GitHub. To install the START-R suite, users should install Docker and follow the README file containing the installation procedure . Finally, in order to run the START-R suite, users should double-click on the START-R file (Windows) or launch the command line (Mac OS X, Linux), followed by opening an internet browser at the following URLs: http://localhost:3838/ for START-R Analyzer and http://localhost:3839/ for START-R Viewer.