Minimal amount of work to deprecate lazyeval dplyr

[DavisVaughan]

"f75c7a05-db21-49a1-83cc-4d4f29f77bf4"

Looking like this is the newly affected set, plus or minus a few if Claude missed some (~50)

## Defunct SE functions: `filter_()`, `select_()`, `mutate_()`, `summarise_()`, `group_by_()`, `arrange_()`, `rename_()`, `do_()`, `distinct_()`, `group_indices_()`

Packages using deprecated underscore SE variants of dplyr verbs that were deprecated in dplyr 0.7.0 and are now defunct. These need to migrate to standard evaluation.

* [ ] [AQuadtree](mailto:raymond.lagonigro@uvic.cat)
* [ ] [auctestr](mailto:jpgard@umich.edu)
* [ ] [benthos](mailto:dennis.Walvoort@wur.nl)
* [ ] [carpenter](https://github.com/lwjohnst86/carpenter)
* [ ] [CB2](mailto:hyunhwanjeong@icloud.com)
* [ ] [cofeatureR](https://github.com/tinyheero/cofeatureR)
* [ ] [cogmapr](mailto:f.vanwindekens@cra.wallonie.be)
* [ ] [dataCompareR](https://github.com/capitalone/dataCompareR)
* [ ] [ddpcr](https://github.com/daattali/ddpcr)
* [ ] [dmutate](https://github.com/kylebaron/dmutate)
* [ ] [eesim](https://github.com/sakoehler7/eesim)
* [ ] [eoffice](mailto:guokai8@gmail.com)
* [ ] [ESTER](https://github.com/lnalborczyk/ESTER)
* [ ] [funModeling](https://github.com/pablo14/funModeling)
* [ ] [ggmuller](mailto:robjohnnoble@gmail.com)
* [ ] [gunsales](mailto:edd@debian.org)
* [ ] [hurricaneexposure](https://github.com/geanders/hurricaneexposure)
* [ ] [IAT](mailto:dpmartin42@gmail.com)
* [ ] [lookupTable](mailto:enzo.jia@gmail.com)
* [ ] [ncdump](https://github.com/hypertidy/ncdump)
* [ ] [psycho](https://github.com/neuropsychology/psycho.R)
* [ ] [sfo](mailto:rami.krispin@gmail.com)
* [ ] [simts](https://github.com/SMAC-Group/simts)
* [ ] [tvgeom](mailto:vincent@csp-inc.org)
* [ ] [useful](https://github.com/jaredlander/useful)
* [ ] [CollapseLevels](mailto:toton1181@gmail.com)
* [ ] [dat](https://github.com/wahani/dat)
* [ ] [EpiSignalDetection](https://github.com/EU-ECDC/EpiSignalDetection)
* [ ] [ezec](https://github.com/grunwaldlab/ezec)
* [ ] [GFE](mailto:wfaceror@unal.edu.co)
* [ ] [genogeographer](mailto:tvede@math.aau.dk)
* [ ] [ipft](mailto:esansano@uji.es)
* [ ] [LAGOSNE](https://github.com/cont-limno/LAGOSNE)
* [ ] [MetaNet](https://github.com/Asa12138/MetaNet)
* [ ] [pkggraph](https://github.com/talegari/pkggraph)
* [ ] [quickpsy](mailto:danilinares@gmail.com)
* [ ] [representr](mailto:andee.kaplan@colostate.edu)
* [ ] [rollmatch](https://github.com/RTIInternational/rollmatch)
* [ ] [saeSim](https://github.com/wahani/saeSim)
* [ ] [simPH](https://github.com/christophergandrud/simPH)
* [ ] [SVMMaj](mailto:hoksan@gmail.com)
* [ ] [Tendril](https://github.com/Karpefors/Tendril)
* [ ] [tidygenomics](https://github.com/const-ae/tidygenomics)
* [ ] [timelineS](https://github.com/daheelee/timelineS)
* [ ] [traineR](https://github.com/PROMiDAT/traineR)
* [ ] [vpc](https://github.com/ronkeizer/vpc)

## Defunct functions: `summarise_each()` and `mutate_each()`

Packages using `summarise_each()` or `mutate_each()` that were deprecated in dplyr 0.7.0 and are now defunct. Need to migrate to `across()` or `summarise_all()`.

* [ ] [bootnet](https://github.com/SachaEpskamp/bootnet)
* [ ] [Lahman](https://github.com/cdalzell/Lahman)
* [ ] [MSiP](mailto:matinerb.94@gmail.com)
* [ ] [sfc](https://github.com/ctfysh/sfc)
* [ ] [ZIBR](https://github.com/PennChopMicrobiomeProgram/ZIBR)