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Recommended Reading
Note: The ggplot2 wiki is no longer maintained, please use the ggplot2 website instead!
This is meant to provided references to high quality works on visualizing data.  If you know of a great reference that was left out, please add it!  If you have read one of these and are inclined, please share your thoughts.
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John M. Chambers, William S. Cleveland, Beat Kleiner, and Paul A. Tukey. (1983). Graphical methods for Data Analysis. Wadsworth. 
 Note: I had difficulty locating this book. It looks like one can find it used, and some libraries have it.
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William S. Cleveland (Editor). (1988). The Collected Works of John W. Tukey: Graphics 1965–1985, Volume V. Chapman & Hall, New York, NY. 
 ISBN-10: 0412992612 ISBN-13: 978-0412992612
 Amazon.com
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William Cleveland. (1993). A model for studying display methods of statistical graphics. Journal of Computational and Graphical Statistics, 2:323–364. 
 PS file from Bell Labs
 Stable jstor link
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William S. Cleveland. (1993). Visualizing Data. Hobart Press. 
 ISBN-10: 0963488406 ISBN-13: 978-0963488404
 Book Website
 Publisher Website
 Amazon.com
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William S. Cleveland. (1994). The Elements of Graphing Data (Second ed.). Hobart Press. 
 ISBN-10: 0963488414 ISBN-13: 978-0963488411
 Book Website
 Publisher Website
 Amazon.com
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Michael Friendly. (2000). Visualizing Categorical Data. SAS Institute, Carey, NC. 
 ISBN-10: 1580256600 ISBN-13: 978-1580256605
 Book Website
 Amazon.com
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Björn Gustavii. (2008). How to write and illustrate a scientific paper. Cambridge University Press. 
 ISBN-10: 052170393X ISBN-13: 978-0521703932
 Publisher Website
 Amazon.com
 Note: This book covers general writing but also a chapter on graphics.
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Paul Murrell. (1998). Investigations in Graphical Statistics. PhD thesis, The University of Auckland. 
 Note: I could not locate any links, but it is a good excuse to visit New Zealand.
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Paul Murrell. (2005). R Graphics. Chapman & Hall/CRC. 
 ISBN-10: 158488486X ISBN-13: 978-1584884866
 Book Website
 Publisher Website
 Amazon.com
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Naomi B. Robbins. (2004). Creating More Effective Graphs. Wiley, New York. 
 ISBN-10: 047127402X ISBN-13: 978-0471274025
 Book Website
 Amazon.com
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Edward R. Tufte. (1990). Envisioning Information (Fourth ed.). Graphics Press. 
 ISBN-10: 0961392118 ISBN-13: 978-0961392116
 Book Website
 Amazon.com
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Edward R. Tufte. (1997). Visual Explanations. Graphics Press. 
 ISBN-10: 0961392126 ISBN-13: 978-0961392123
 Book Website
 Amazon.com
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Edward R. Tufte. (2001). The Visual Display of Quantitative Information (Second ed.). Graphics Press. 
 ISBN-10: 0961392142 ISBN-13: 978-0961392147
 Book Website
 Amazon.com
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Edward R. Tufte. (2006). Beautiful Evidence. Graphics Press. 
 ISBN-10: 0961392177 ISBN-13: 978-0961392178
 Book Website
 Amazon.com
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John W. Tukey. (1977). Exploratory Data Analysis. Addison-Wesley Publishing Co., Reading, Massachusetts. 
 ISBN-10: 0201076160 ISBN-13: 978-0201076165
 Amazon.com
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Howard Wainer & David Thissen. (1981). Graphical data analysis. Annual Review of Psychology, 32:191–241. doi:10.1146/annurev.ps.32.020181.001203 
 Annual Reviews Link (may not be stable)
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Howard Wainer. (1984). How to Display Data Badly. The American Statistician, Vol. 38, No. 2, pp. 137–147. 
 A link to the PDF
 Stable jstor link
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Howard Wainer. (2000). Visual Revelations: Graphical Tales of Fate and Deception From Napoleon Bonaparte To Ross Perot. Lawrence Erlbaum Associates, New Jersey. 
 ISBN-10: 0805838783 ISBN-13: 978-0805838787
 Amazon.com
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Howard Wainer. (2005). Graphic Discovery: A Trout in the Milk and Other Visual Adventures. Princeton, NJ: Princeton University Press. 
 ISBN-10: 0691103011 ISBN-13: 978-0691103013
 Publisher Website
 Amazon.com
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Hadley Wickham. (2009). ggplot2: Elegant Graphics for Data Analysis (Second ed.). Springer, New York. 
 ISBN-10: 0387981403 ISBN-13: 978-0387981406
 Book Website
 Amazon.com
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Leland Wilkinson. (2005). The Grammar of Graphics (Second ed.). Springer, New York. 
 ISBN-10: 0387245448 ISBN-13: 978-0-387-24544-7
 Book Website
 Publisher Webiste
 Amazon.com