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Closed-loop optogenetic stimulation paradigm that utilizes Bonsai and DeepLabCut-Live pose estimation to manipulate spinal circuits based on the phase of the rodent locomotor cycle

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tischfieldlab/Closed_Loop_Opto_Stimulation

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Closed_Loop_Opto_Stimulation Paradigm

Closed-loop optogenetic stimulation paradigm that utilizes Bonsai and DeepLabCut-Live pose estimation to manipulate spinal circuits based on the phase of the rodent locomotor cycle

Plot_indiv_traces

This script plots the indivudal trace of the toe trajectory according to the normalized step cycle from 0 to 1.

Compare_avg_traces

This script compiles the tracked videos per control and experimental mouse and plots the average trajectories with +/- SEM according to the normalized step cycle.

Stick_plot_150fps

This script plots the stick plot trajectory of all user defined joints during the completion of one step cycle.

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Closed-loop optogenetic stimulation paradigm that utilizes Bonsai and DeepLabCut-Live pose estimation to manipulate spinal circuits based on the phase of the rodent locomotor cycle

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